LOCUS BC010861 1938 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 21, mRNA (cDNA clone
MGC:9233 IMAGE:3900540), complete cds.
ACCESSION BC010861
VERSION BC010861.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: m Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56549143.
FEATURES Location/Qualifiers
source 1..1938
/db_xref="H-InvDB:HIT000035080"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9233 IMAGE:3900540"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1938
/gene="TRIM21"
/gene_synonym="RNF81"
/gene_synonym="RO52"
/gene_synonym="SSA"
/db_xref="GeneID:6737"
/db_xref="HGNC:HGNC:11312"
/db_xref="MIM:109092"
CDS 85..1512
/gene="TRIM21"
/gene_synonym="RNF81"
/gene_synonym="RO52"
/gene_synonym="SSA"
/codon_start=1
/product="tripartite motif-containing 21"
/protein_id="AAH10861.1"
/db_xref="GeneID:6737"
/db_xref="HGNC:HGNC:11312"
/db_xref="MIM:109092"
/translation="MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQVG
KGGGSVCPVCRQRFLLKNLRPNRQLANMVNNLKEISQEAREGTQGERCAVHGERLHLF
CEKDGKALCWVCAQSRKHRDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEI
AIKRADWKKTVETQKSRIHAEFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKL
AQQSQALQELISELDRRCHSSALELLQEVIIVLERSESWNLKDLDITSPELRSVCHVP
GLKKMLRTCAVHITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGA
QHFHSGKHYWEVDVTGKEAWDLGVCRDSVRRKGHFLLSSKSGFWTIWLWNKQKYEAGT
YPQTPLHLQVPPCQVGIFLDYEAGMVSFYNITDHGSLIYSFSECAFTGPLRPFFSPGF
NDGGKNTAPLTLCPLNIGSQGSTDY"
BASE COUNT 536 a 471 c 497 g 434 t
ORIGIN
1 gggagctggc taccagcgtt gagtcccctg taaagccaaa ccccctaaag gtctccacac
61 tgctgtttaa cggcacactt gacaatggct tcagcagcac gcttgacaat gatgtgggag
121 gaggtcacat gccctatctg cctggacccc ttcgtggagc ctgtgagcat cgagtgtggc
181 cacagcttct gccaggaatg catctctcag gttgggaaag gtgggggcag cgtctgtcct
241 gtgtgccggc agcgctttct gctcaagaat ctccggccca atcgacagct agccaacatg
301 gtgaacaacc ttaaagaaat cagccaggag gccagagagg gcacacaggg ggaacggtgt
361 gcagtgcatg gagagagact tcacctgttc tgtgagaaag atgggaaggc cctttgctgg
421 gtatgtgccc agtctcggaa acaccgtgac cacgccatgg tccctcttga ggaggctgca
481 caggagtacc aggagaagct ccaggtggca ttaggggaac tgagaagaaa gcaggagttg
541 gctgagaagt tggaagtgga aattgcaata aagagagcag actggaagaa aacagtggaa
601 acacagaaat ctaggattca cgcagagttt gtgcagcaaa aaaacttcct ggttgaagaa
661 gaacagaggc agctgcagga gctggagaag gatgagaggg agcagctgag aatcctgggg
721 gagaaagagg ccaagctggc ccagcagagc caggccctac aggagctcat ctcagagcta
781 gatcgaaggt gccacagctc agcactggaa ctgctgcagg aggtgataat tgtcctggaa
841 aggagtgagt cctggaacct gaaggacctg gatattacct ctccagaact caggagtgtg
901 tgccatgtgc cagggctgaa gaagatgctg aggacatgtg cagtccacat cactctggat
961 ccagacacag ccaatccgtg gctgatactt tcagaagatc ggagacaagt gaggcttgga
1021 gacacccagc agagcatacc tggaaatgaa gagagatttg atagttatcc tatggtcctg
1081 ggtgcccagc actttcactc tggaaaacat tactgggagg tagatgtgac aggaaaggag
1141 gcctgggacc tgggtgtctg cagagactct gtgcgcagga aggggcactt tttgcttagt
1201 tccaagagtg gcttctggac aatttggttg tggaacaaac aaaaatatga ggctggcacc
1261 tacccccaga ctcccctcca ccttcaggtg cctccatgcc aagttgggat tttcctggac
1321 tatgaggctg gcatggtctc cttctacaac atcactgacc atggctccct catctactcc
1381 ttctctgaat gtgcctttac aggacctctg cggcccttct tcagtcctgg tttcaatgat
1441 ggaggaaaaa acacagcccc tctaaccctc tgtccactga atattggatc acaaggatcc
1501 actgactatt gatggctttc tctggacact gccactctcc ccattggcac cgcttctcag
1561 ccacaaaccc tgcctctttt ccccatgaac tctgaaccac ctttgtctct gcagaggcat
1621 ccggatccca gcaagcgagc tttagcaggg aagtcacttc accatcaaca ttcctgcccc
1681 agatggcttt gtgattccct ccagtgaagc agcctcctta tatttggccc aaactcatct
1741 tgatcaacca aaaacatgtt tctgccttct ttatgggact taagtttttt tttttctcct
1801 ctccatctct aggatgtcgt ctttggtgag atctctatta tatcttgtat ggtttgcaaa
1861 agggcttcct aaaaataaaa aataaaattt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaa
//