LOCUS BC010849 2169 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile, variant, mRNA (cDNA clone MGC:8851 IMAGE:3878776), complete cds. ACCESSION BC010849 VERSION BC010849.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2169) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2169) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 14 Row: c Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8923531. FEATURES Location/Qualifiers source 1..2169 /db_xref="H-InvDB:HIT000035069" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8851 IMAGE:3878776" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_68" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2169 /gene="CLN6" /gene_synonym="FLJ20561" /gene_synonym="HsT18960" /db_xref="GeneID:54982" /db_xref="HGNC:HGNC:2077" /db_xref="MIM:606725" CDS 73..1008 /gene="CLN6" /gene_synonym="FLJ20561" /gene_synonym="HsT18960" /codon_start=1 /product="ceroid-lipofuscinosis, neuronal 6, late infantile, variant" /protein_id="AAH10849.1" /db_xref="GeneID:54982" /db_xref="HGNC:HGNC:2077" /db_xref="MIM:606725" /translation="MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFH LDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIE RSPRTLPRSITYVSIIIFIMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPE TLIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSG LYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALW VAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSRH" BASE COUNT 391 a 673 c 609 g 496 t ORIGIN 1 ctccgccggg gcagccgagc tgaaccggtc tcttcctcgg aaaggcaggg ccgaggggcc 61 tgcggggcag ccatggaggc gacgcggagg cggcagcacc tgggagcgac gggcggccca 121 ggcgcgcagc tgggcgcctc cttcctgcag gccaggcatg gctctgtgag cgctgatgag 181 gctgcccgca cggctccctt ccacctcgac ctctggttct acttcacact gcagaactgg 241 gttctggact ttgggcgtcc cattgccatg ctggtattcc ctctcgagtg gtttccactc 301 aacaagccca gtgttgggga ctacttccac atggcctaca acgtcatcac gccctttctc 361 ttgctcaagc tcatcgagcg gtccccccgc accctgccac gctccatcac gtacgtgagc 421 atcatcatct tcatcatggg tgccagcatc cacctggtgg gtgactctgt caaccaccgc 481 ctgctcttca gtggctacca gcaccacctg tctgtccgtg agaaccccat catcaagaat 541 ctcaagccgg agacgctgat cgactccttt gagctgctct actattatga tgagtacctg 601 ggtcactgca tgtggtacat ccccttcttc ctcatcctct tcatgtactt cagcggctgc 661 tttactgcct ctaaagctga gagcttgatt ccagggcctg ccctgctcct ggtggcaccc 721 agtggcctgt actactggta cctggtcacc gagggccaga tcttcatcct cttcatcttc 781 accttcttcg ccatgctggc cctcgtcctg caccagaagc gcaagcgcct cttcctggac 841 agcaacggcc tcttcctctt ctcctccttc gcactgaccc tcttgcttgt ggcgctctgg 901 gtcgcctggc tgtggaatga ccctgttctc aggaagaagt acccgggtgt catctacgtc 961 cctgagccct gggctttcta cacccttcac gtcagcagtc ggcactgagt ccctggcacc 1021 aggctctggc gctctgctgg gtgggagggt gggccatgga gggcatctga atacaggagt 1081 agggggggtg tgggtgtgta accagagacc gagagcatga gtggggtgtg cctcgtgtgc 1141 gtggattcgt gtgtgtgtgt gtgtcttgta tatgtgtgcg cagagtgcat cattttcaga 1201 ctctactatt tccgtcaagt ttctgtttga tttggatcat ctcaggatcg gattctgttt 1261 tagagtgttt ctgggccagg atccgggccc ctgccctcct ctgcacctga ccacactccc 1321 tactcagggc tagtctgttc ttcccggaca tcttctggta gccgtgcagg agagggctgg 1381 gtggggcaga ggccaggagg ggacctggtg tgtcacctgc ccaccacctg gctcatccct 1441 caggcccacc ctgaccctac attacatagg ttacgtcagc ctactgtggc tgttgagcaa 1501 agcatttctc ctttctgggc ctcatttgca ctagatgggc ctgtggtccc aaagtaggtc 1561 agtaggttgg ggttgctgac accccttggg tgcagctttg ggacagatga gtggctctgt 1621 cctgtcactg ccctctccct gcctgggggc tatgtgcact ccagacccct gcccaggctc 1681 aggcccatga ggtatggaga caccctggcc cccaggagct ggaggcaccg cccactcccc 1741 tggcattcca gctttgcagg tgaccctcct ctacccaaag ctctgtcccc ctgctcccac 1801 tccagaagaa ctgcggcacg tgcttcgggc agcctagcca caggctttga gcgcctgcat 1861 tcctgggggc tggagggtgg ggtgccaaag gccctgagca aaagccagag ctcctctcat 1921 caaagccttt acaaggtgct gggcccagag gctttgcctt gacagagtgg cccagggttt 1981 caagggagga ggaacctccc cctacctagg acccttcctg tggggggtct acagagtcag 2041 ggacagaagg gaagggaccc acaggaagtc acagtggtgc ccagggatgt gtcagccccc 2101 agccacgggg acgcgggatt caagaatgaa gtaaatacag tcacagcccc aaaaaaaaaa 2161 aaaaaaaaa //