LOCUS BC010525 1756 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens V-set and immunoglobulin domain containing 4, mRNA
(cDNA clone MGC:17046 IMAGE:4151604), complete cds.
ACCESSION BC010525
VERSION BC010525.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1756)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1756)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: k Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6005957.
FEATURES Location/Qualifiers
source 1..1756
/db_xref="H-InvDB:HIT000034983"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17046 IMAGE:4151604"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1756
/gene="VSIG4"
/gene_synonym="Z39IG"
/db_xref="GeneID:11326"
/db_xref="HGNC:HGNC:17032"
/db_xref="MIM:300353"
CDS 4..1203
/gene="VSIG4"
/gene_synonym="Z39IG"
/codon_start=1
/product="V-set and immunoglobulin domain containing 4"
/protein_id="AAH10525.1"
/db_xref="GeneID:11326"
/db_xref="HGNC:HGNC:17032"
/db_xref="MIM:300353"
/translation="MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYD
PLQGYTQVLVKWLVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLST
LEMDDRSHYTCEVTWQTPDGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMR
ISLQCQARGSPPISYIWYKQQTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVG
SEQHSDIVKFVVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSA
GPGKSLPVFAIILIISLCCMVVFTMAYIMLCRKTSQQEHVYEAARAHAREANDSGETM
RVAIFASGCSSDEPTSQNLGNNYSDEPCIGQEYQIIAQINGNYARLLDTVPLDYEFLA
TEGKSVC"
BASE COUNT 450 a 483 c 414 g 409 t
ORIGIN
1 gtgatgggga tcttactggg cctgctactc ctggggcacc taacagtgga cacttatggc
61 cgtcccatcc tggaagtgcc agagagtgta acaggacctt ggaaagggga tgtgaatctt
121 ccctgcacct atgaccccct gcaaggctac acccaagtct tggtgaagtg gctggtacaa
181 cgtggctcag accctgtcac catctttcta cgtgactctt ctggagacca tatccagcag
241 gcaaagtacc agggccgcct gcatgtgagc cacaaggttc caggagatgt atccctccaa
301 ttgagcaccc tggagatgga tgaccggagc cactacacgt gtgaagtcac ctggcagact
361 cctgatggca accaagtcgt gagagataag attactgagc tccgtgtcca gaaactctct
421 gtctccaagc ccacagtgac aactggcagc ggttatggct tcacggtgcc ccagggaatg
481 aggattagcc ttcaatgcca ggctcggggt tctcctccca tcagttatat ttggtataag
541 caacagacta ataaccagga acccatcaaa gtagcaaccc taagtacctt actcttcaag
601 cctgcggtga tagccgactc aggctcctat ttctgcactg ccaagggcca ggttggctct
661 gagcagcaca gcgacattgt gaagtttgtg gtcaaagact cctcaaagct actcaagacc
721 aagactgagg cacctacaac catgacatac cccttgaaag caacatctac agtgaagcag
781 tcctgggact ggaccactga catggatggc taccttggag agaccagtgc tgggccagga
841 aagagcctgc ctgtctttgc catcatcctc atcatctcct tgtgctgtat ggtggttttt
901 accatggcct atatcatgct ctgtcggaag acatcccaac aagagcatgt ctacgaagca
961 gccagggcac atgccagaga ggccaacgac tctggagaaa ccatgagggt ggccatcttc
1021 gcaagtggct gctccagtga tgagccaact tcccagaatc tgggcaacaa ctactctgat
1081 gagccctgca taggacagga gtaccagatc atcgcccaga tcaatggcaa ctacgcccgc
1141 ctgctggaca cagttcctct ggattatgag tttctggcca ctgagggcaa aagtgtctgt
1201 taaaaatgcc ccattaggcc aggatctgct gacataattg cctagtcagt ccttgccttc
1261 tgcatggcct tcttccctgc tacctctctt cctggatagc ccaaagtgtc cgcctaccaa
1321 cactggagcc gctgggagtc actggctttg ccctggaatt tgccagatgc atctcaagta
1381 agccagctgc tggatttggc tctgggccct tctagtatct ctgccggggg cttctggtac
1441 tcctctctaa ataccagagg gaagatgccc atagcactag gacttggtca tcatgcctac
1501 agacactatt caactttggc atcttgccac cagaagaccc gagggaggct cagctctgcc
1561 agctcagagg accagctata tccaggatca tttctctttc ttcagggcca gacagctttt
1621 aattgaaatt gttatttcac aggccagggt tcagttctgc tcctccacta taagtctaat
1681 gttctgactc tctcctggtg ctcaataaat atctaatcat accagcaaaa aaaaaaaaaa
1741 aaaaaaaaaa aaaaaa
//