LOCUS BC010451 3072 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens CDC42 effector protein (Rho GTPase binding) 4, mRNA (cDNA clone MGC:17125 IMAGE:4181539), complete cds. ACCESSION BC010451 VERSION BC010451.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3072) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3072) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: k Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 48375181. FEATURES Location/Qualifiers source 1..3072 /db_xref="H-InvDB:HIT000034952" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17125 IMAGE:4181539" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3072 /gene="CDC42EP4" /gene_synonym="BORG4" /gene_synonym="CEP4" /gene_synonym="KAIA1777" /gene_synonym="MGC17125" /gene_synonym="MGC3740" /db_xref="GeneID:23580" /db_xref="HGNC:HGNC:17147" /db_xref="MIM:605468" CDS 201..1271 /gene="CDC42EP4" /gene_synonym="BORG4" /gene_synonym="CEP4" /gene_synonym="KAIA1777" /gene_synonym="MGC17125" /gene_synonym="MGC3740" /codon_start=1 /product="CDC42 effector protein (Rho GTPase binding) 4" /protein_id="AAH10451.1" /db_xref="GeneID:23580" /db_xref="HGNC:HGNC:17147" /db_xref="MIM:605468" /translation="MLILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAG DAFGDTSFLNSKAGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDM LGSLRDSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTE EAVPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSML GDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSL PSHALEDEGWAAAAPSPGSARSMGSHTTRDSSSLSSCTSGILEERSPAFRGPDRARAA VSRQPDKEFSFMDEEEEDEIRV" BASE COUNT 632 a 921 c 868 g 651 t ORIGIN 1 ctgacagggg ccgccagccc ctccgccgcg cggagcccac gaaggggaca gcgcagccgg 61 cccagagctc gggtctccgg ggaccgagcc ttatgatctc ctcattgcgt ccccctctgc 121 ccactggact tggacttcag atctgacccc agacctgccg gctacctcgg gagggcccac 181 ctccccgccc atccagcaag atgctaatcc tcaagcaact ggtgtccagc tcggtgcact 241 ccaagcgccg ttcccgagcg gacctcacgg ccgagatgat cagcgccccg ctgggcgact 301 tccgccacac catgcacgtt ggccgggccg gagacgcctt tggggacacc tccttcctca 361 atagcaaggc tggcgagccc gacggcgagt ccttggacga acagccctct tcttcatctt 421 ccaaacgcag tctcctgtcc aggaagttcc ggggcagcaa gcggtcacag tcggtgacca 481 ggggggagcg ggagcagcgt gacatgctgg gctccctgcg ggactcggcc ctgtttgtca 541 agaatgccat gtccctgccc cagctcaatg agaaggaggc cgcggagaag ggcaccagta 601 agctgcccaa gagcctgtca tccagccccg tgaagaaggc caatgacggg gagggcggcg 661 atgaggaggc gggcacggag gaggcagtgc cccgtcggaa tggggccgcg ggtccacatt 721 cccctgaccc cctcctcgat gagcaggcct ttggggatct gacagatctg cctgtcgtgc 781 ccaaggccac gtacgggctg aagcatgcgg agtccatcat gtccttccac atcgacctgg 841 ggccctccat gctgggtgac gtcctcagca tcatggacaa ggaggagtgg gaccccgagg 901 agggggaggg tggttaccat ggcgatgagg gcgccgctgg caccatcacc caggctcccc 961 cgtacgccgt ggcggcccct cccctggcaa ggcaggaagg caaggctggc ccagacttgc 1021 cctccctccc ctcccatgct ctggaggatg aggggtgggc agcagcggcc cccagccccg 1081 gctcagcccg cagcatgggc agccacacca cacgggacag cagctccctc tccagctgca 1141 cctcaggcat cctggaggag cgcagccctg ccttccgggg gccggacagg gcccgggctg 1201 ctgtctcaag acagccagac aaggagttct ccttcatgga tgaggaggag gaggatgaaa 1261 tccgtgtgtg aggcggacag tgggtggcca ccgggagctc ttggctgcat cttctccctg 1321 cccccacccc actatgacct ttgaccctac ggcgcagggg cagccaggac ccttgattca 1381 gaccatggac cctggacctt gtagatgagg gacactggcc tggccctcgg gtcttcggag 1441 gacgtagggg gctggcatgg gtgccgactg gctgcctgac ttcatcatgc tccctgcact 1501 taggctgcgt gggacaaggg ctgtgttgtc acagcaggaa taggttttcc tctgttggcc 1561 tccctttcct ccaccctggc ctcaaatgga tgccagatgc caaccccagt tctggccacg 1621 tacagccagc gggtcagccc agaggcagcc tcagctccag ggctaaggac tctcggctcc 1681 cattttctct gctggcgttt ctgctgtgcc cagcagtggc tgctggggaa gcagctgcag 1741 caggagggag acggtcttgc ctctcagccc ctccctgccc caccccagct cctgccctgg 1801 aaatctggag ccccttggag ctgagctgga cggggggcca gctgcgagca tgtgcactaa 1861 acgcagccct ttccagggga agagaacagg atggagaatg gaaggaaagc cccccaggct 1921 tcgtgaattg caagaaggga cccttccagg atgacactag gaacagggct agggcactcg 1981 ctcagtccct aggggcttgt ttgttcttta ttattgtgtt taaatcctta tagagcaata 2041 tcaggatggt gttaataggt ctgcctcaga atgagaatca atccttttag aaaaccttta 2101 tactaagcct cctcttcaaa attcacagtg gcgattagcg gactggagtc tggtggcgat 2161 tagcggactg gagtctgggg acatccgtgg caaagacacc agctcaactt tagtgcttcc 2221 caactttatt tagaatgaca tggggtgggt gtctggtgtg tgtgttttcc ctacgcacct 2281 cccatagcta ttaacaactg aggaaggcca gtgcagaata tttttggaga acgatttttt 2341 ttttaaataa tatatcattc ctatgggggg aaagcctttt ttttcttttt ggctgagtta 2401 ttccctccct cccctcaata ccctcagtac tgactacttc cctttctttt ctcaggcctc 2461 cccccaccga cttttgaggc cagggttggc cagatttagc aaaaccaaaa cagagtgctg 2521 agttaaacgc aaatttcagg taaacaaaag ataattttct agcattaata tgccccacgc 2581 aatatttgga acacttatgt gaaaaatgat ttgtttttct gaaattcacg tttctctctg 2641 agtcctgtaa ctgtccccga ggggattgag cagaagctcg ggtatgagcc ctgaggttga 2701 ctgccggtta tttttctgtc ctgggaacag cctgacccac ctccctgtct ccatgtagcc 2761 agtgagggga gggggagaca cagaaccaac cacagccagg ggcgtcccca tggtgactgt 2821 ggcccggccc ctcctctctt gcctgactct cctctcttgc ctgactctag acactaactt 2881 agttccaggt tcggtgccct gttggtgctc ctgtttccaa tagcttaggt cccatggtgg 2941 gggaggaacc tcaggggcta tgcagccccc gccagctgcc ctcgaatccc gtccaggcca 3001 attccagatt ctaaactgat ttttttcatg atattgtcaa aacagtgagg aaacattaaa 3061 aaaaaaaaaa aa //