LOCUS BC010441 2808 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens carbohydrate sulfotransferase 10, mRNA (cDNA clone
MGC:17148 IMAGE:4158309), complete cds.
ACCESSION BC010441
VERSION BC010441.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2808)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2808)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: g Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50428923.
FEATURES Location/Qualifiers
source 1..2808
/db_xref="H-InvDB:HIT000034946"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17148 IMAGE:4158309"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2808
/gene="CHST10"
/gene_synonym="HNK-1ST"
/gene_synonym="HNK1ST"
/gene_synonym="MGC17148"
/db_xref="GeneID:9486"
/db_xref="HGNC:HGNC:19650"
/db_xref="MIM:606376"
CDS 340..1410
/gene="CHST10"
/gene_synonym="HNK-1ST"
/gene_synonym="HNK1ST"
/gene_synonym="MGC17148"
/codon_start=1
/product="carbohydrate sulfotransferase 10"
/protein_id="AAH10441.1"
/db_xref="GeneID:9486"
/db_xref="HGNC:HGNC:19650"
/db_xref="MIM:606376"
/translation="MHHQWLLLAACFWVIFMFMVASKFITLTFKDPDVYSAKQEFLFL
TTMPEVRKLPEEKHIPEELKPTGKELPDSQLVQPLVYMERLELIRNVCRDDALKNLSH
TPVSKFVLDRIFVCDKHKILFCQTPKVGNTQWKKVLIVLNGAFSSIEEIPENVVHDHE
KNGLPRLSSFSDAEIQKRLKTYFKFFIVRDPFERLISAFKDKFVHNPRFEPWYRHEIA
PGIIRKYRRNRTETRGIQFEDFVRYLGDPNHRWLDLQFGDHIIHWVTYVELCAPCEIM
YSVIGHHETLEDDAPYILKEAGIDHLVSYPTIPPGITVYNRTKVEHYFLGISKRDIRR
LYARFEGDFKLFGYQKPDFLLN"
BASE COUNT 680 a 735 c 775 g 618 t
ORIGIN
1 ggcccccaaa gccggtctag cgcgccgggc gtcttcctta cttccgctgc cgccgccgcc
61 acatcccggg acccgacggg ccgcggcgcg gaggcctcgg ggcaaggtgg ggcgggcctc
121 ccgagctccc aggaccccgc gcgcttcgcc cacaggcccg gcgaagcccg acccgcgcgg
181 cgcccccagg gccaggggag gagcctaagg acccggacga gcgccgctcc agtaggtgac
241 aagaggaaac aagaacctca gttcagggga aacacagcaa ggaaatgtga gccccaggct
301 gcagaaggaa gagtcagtga atggctgcgg tgtgacaaca tgcaccacca gtggcttctg
361 ctggccgcat gcttttgggt gattttcatg ttcatggtgg ctagcaagtt catcacgttg
421 acctttaaag acccagatgt gtacagtgcc aaacaggagt ttctgttcct gacaaccatg
481 ccggaagtga ggaagttgcc agaagagaag cacattcctg aggaactgaa gccaactggg
541 aaggagcttc cagacagcca gctcgttcag cccctggtct acatggagcg cctggaactc
601 atcagaaacg tctgcaggga tgatgccctg aagaatctct cgcacactcc tgtctccaag
661 tttgtcctgg accgaatatt tgtctgtgac aagcacaaga ttcttttctg ccagactccc
721 aaagtgggca acacccagtg gaagaaagtg ctgattgttc taaatggagc attttcttcc
781 attgaggaga tccccgaaaa cgtggtgcac gaccacgaga agaacggcct tcctcggctc
841 tcttccttca gtgatgcaga aattcagaag cgattgaaaa catacttcaa gttttttatt
901 gtaagagatc ccttcgaaag acttatttct gcatttaagg ataaatttgt tcacaatccc
961 cggtttgagc cttggtacag gcatgagatt gctcctggca tcatcagaaa atacaggagg
1021 aaccggacag agacgcgggg gatccagttt gaagatttcg tgcgctacct cggcgatccg
1081 aaccacagat ggctagacct tcagtttggg gaccacatca ttcactgggt gacgtatgta
1141 gagctctgtg ctccctgtga gataatgtac agtgtgattg gacaccacga gaccctggag
1201 gacgatgccc catacatctt aaaagaggct ggcattgacc acctggtgtc atacccgact
1261 atccctccgg gcattaccgt gtataacaga accaaggtgg agcactattt cctgggcatc
1321 agcaaacgag acatccgacg cctgtatgcc cgtttcgaag gggactttaa gctctttggg
1381 taccagaaac cagacttttt gctaaactaa tgcataagac ctatgaattc aaatatcttt
1441 attagacctg gggctaacca ggtgaagatc tgagcccaga aatgaccctt cctccaccac
1501 acccctcctt tgaggatgcc cggggtctcc cacaggcctg tgagttgcct cggcatatga
1561 cgcagaaccc caactgttac aacttagttt ggatgtaaga tgctctgagg accctgccca
1621 cacccctgcg tgcattagga tgtcgctggc ctttgctcac ctcagagggg agaaaaggct
1681 aaagatttgc agtttgacag cccagcaggg aggaagcatc acacagcgtt aggagccgtt
1741 tccttcaggt gttaaggaag gggatgcccc tgaggttctc ctggctagtc ggggtggctt
1801 cacccatcac tggtgggttg caggaacagc acccaggact ctgaggaggg acagagaagc
1861 aagggggctg ctgaaatcgc agagactttt gcagcatcag atctgaggag taaaacggca
1921 cctctggcct tcatcttggt gctgcgacaa ttgtggaggc aaagcattct ttctgtgact
1981 attttgttcc tgtagacagt cagcgatggc cagagggtgg tgtggtgtcc aggggtccat
2041 ctttccagaa tccatgcctg tgtaatgctg gtccatgctt ctgaacctgt gtctgccaag
2101 cgcctatttc attcagcaca agacatacga ttttagaagg tgaggggagg ggaggctttt
2161 tctacctgag aaggggagtg tctttgaggg ccttaaaagg accatggccc aggaatgggg
2221 gcgctggttg ggcttggagc tcaggctgct gtggatcccg gcgcatcagt tctgacttgc
2281 cttacctggg tggacagcag tgaatctcca cctgtcttct ccagggagct cccatgttgg
2341 ggctgaagac gagcaggggc aacctgccag catcacagaa ttcagtgtag tttatacatt
2401 tcgattcctt tcatctcagc aaaatgggca ctgccagagc catttctgat cacaccacca
2461 tcctggacca tgtgactgga aggtgggtaa ccaagttcac cagcaataaa acccagcgcc
2521 caggtagcct ccagcagtgc ggcttcctgg caacaaggta ggccctggtg cagggcaagc
2581 cgcagcgacc atttcagata ccgtccacag ccaggaccgc tgagaactgg gacagtttcc
2641 tgggatgagt gccagcctga gcctgcatgg tgccgccgag cccggggtgg aggagggagc
2701 caggcttcgc ttcaaggcgg cctctacctt ttctcagaat ggtttcctga ttgtgtcaat
2761 gtgaaagtta aataaaattt atgtgccaaa cctgaaaaaa aaaaaaaa
//