LOCUS BC010362 2698 bp mRNA linear HUM 11-SEP-2007 DEFINITION Homo sapiens vacuolar protein sorting 35 homolog (S. cerevisiae), mRNA (cDNA clone MGC:13402 IMAGE:4249949), complete cds. ACCESSION BC010362 VERSION BC010362.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2698) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2698) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (09-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CLONTECH cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 19 Row: i Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41352714. FEATURES Location/Qualifiers source 1..2698 /db_xref="H-InvDB:HIT000034898" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:13402 IMAGE:4249949" /tissue_type="Prostate" /clone_lib="NIH_MGC_83" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..2698 /gene="VPS35" /gene_synonym="DKFZp434E1211" /gene_synonym="DKFZp434P1672" /gene_synonym="MEM3" /db_xref="GeneID:55737" /db_xref="HGNC:HGNC:13487" /db_xref="MIM:606931" CDS 21..2411 /gene="VPS35" /gene_synonym="DKFZp434E1211" /gene_synonym="DKFZp434P1672" /gene_synonym="MEM3" /codon_start=1 /product="vacuolar protein sorting 35 homolog (S. cerevisiae)" /protein_id="AAH10362.1" /db_xref="GeneID:55737" /db_xref="HGNC:HGNC:13487" /db_xref="MIM:606931" /translation="MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALK HASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAG NIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNI LPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRI LVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHL QTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVAT VIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSS AVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTE IVFQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYL ILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQ TISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQ LAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRN TDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTI QVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL" BASE COUNT 827 a 535 c 584 g 752 t ORIGIN 1 gggggctctg gggagtcgcc atgcctacaa cacagcagtc ccctcaggat gagcaggaaa 61 agctcttgga tgaagccata caggctgtga aggtccagtc attccaaatg aagagatgcc 121 tggacaaaaa caagcttatg gatgctctaa aacatgcttc taatatgctt ggtgaactcc 181 ggacttctat gttatcacca aagagttact atgaacttta tatggccatt tctgatgaac 241 tgcactactt ggaggtctac ctgacagatg agtttgctaa aggaaggaaa gtggcagatc 301 tctacgaact tgtacagtat gctggaaaca ttatcccaag gctttacctt ttgatcacag 361 ttggagttgt atatgtcaag tcatttcctc agtccaggaa ggatattttg aaagatttgg 421 tagaaatgtg ccgtggtgtg caacatccct tgaggggtct gtttcttcga aattaccttc 481 ttcagtgtac cagaaatatc ttacctgatg aaggagagcc aacagatgaa gaaacaactg 541 gtgacatcag tgattccatg gattttgtac tgctcaactt tgcagaaatg aacaagctct 601 gggtgcgaat gcagcatcag ggacatagcc gagatagaga aaaaagagaa cgagaaagac 661 aagaactgag aattttagtg ggaacaaatt tggtgcgcct cagtcagttg gaaggtgtaa 721 atgtggaacg ttacaaacag attgttttga ctggcatatt ggagcaagtt gtaaactgta 781 gggatgcttt ggctcaagaa tatctcatgg agtgtattat tcaggttttc cctgatgaat 841 ttcacctcca gactttgaat ccttttcttc gggcctgtgc tgagttacac cagaatgtaa 901 atgtgaagaa cataatcatt gctttaattg atagattagc tttatttgct caccgtgaag 961 atggacctgg aatcccagcg gatattaaac tttttgatat attttcacag caggtggcta 1021 cagtgataca gtctagacaa gacatgcctt cagaggatgt tgtatcttta caagtctctc 1081 tgattaatct tgccatgaaa tgttaccctg atcgtgtgga ctatgttgat aaagttctag 1141 aaacaacagt ggagatattc aataagctca accttgaaca tattgctacc agtagtgcag 1201 tttcaaagga actcaccaga cttttgaaaa taccagttga cacttacaac aatattttaa 1261 cagtcttgaa attaaaacat tttcacccac tctttgagta ctttgactac gagtccagaa 1321 agagcatgag ttgttatgtg cttagtaatg ttctggatta taacacagaa attgtctttc 1381 aagaccaggt ggattccata atgaatttgg tatccacgtt gattcaagat cagccagatc 1441 aacctgtaga agaccctgat ccagaagatt ttgctgatga gcagagcctt gtgggccgct 1501 tcattcatct gctgcgctct gaggaccctg accagcagta cttgattttg aacacagcac 1561 gaaaacattt tggagctggt ggaaatcagc ggattcgctt cacactgcca cctttggtat 1621 ttgcagctta ccagctggct tttcgatata aagagaattc taaagtggat gacaaatggg 1681 aaaagaaatg ccagaagatt ttttcatttg cccaccagac tatcagtgct ttgatcaaag 1741 cagagctggc agaattgccc ttaagacttt ttcttcaagg agcactagct gctggggaaa 1801 ttggttttga aaatcatgag acagtcgcat atgaattcat gtcccaggca ttttctctgt 1861 atgaagatga aatcagcgat tccaaagcac agctagctgc catcaccttg atcattggca 1921 cttttgaaag gatgaagtgc ttcagtgaag agaatcatga acctctgagg actcagtgtg 1981 cccttgctgc atccaaactt ctaaagaaac ctgatcaggg ccgagctgtg agcacctgtg 2041 cacatctctt ctggtctggc agaaacacgg acaaaaatgg ggaggagctt cacggaggca 2101 agagggtaat ggagtgccta aaaaaagctc taaaaatagc aaatcagtgc atggacccct 2161 ctctacaagt gcagcttttt atagaaattc tgaacagata tatctatttt tatgaaaagg 2221 aaaatgatgc ggtaacaatt caggttttaa accagcttat ccaaaagatt cgagaagacc 2281 tcccgaatct tgaatccagt gaagaaacag agcagattaa caaacatttt cataacacac 2341 tggagcattt gcgcttgcgg cgggaatcac cagaatccga ggggccaatt tatgaaggtc 2401 tcatccttta aaaaggaaat agctcaccat actcctttcc atgtacatcc agtgagggtt 2461 ttattacgct aggtttccct tccatagatt gtgcctttca gaaatgctga ggtaggtttc 2521 ccatttctta cctgtgatgt gttttaccca gcacctccgg acactcacct tcaggacctt 2581 aataaaatta ttcacttggt aagtgttcaa gtctttctga tcaccccaag tagcatgact 2641 gatctgcaat ttaaaattcc tgtgatctgc aaaaaaaaaa aaaaaaaaaa aaaaaaaa //