LOCUS BC010349 1618 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 7, mRNA (cDNA clone MGC:13320
IMAGE:4093672), complete cds.
ACCESSION BC010349
VERSION BC010349.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1618)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1618)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: e Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111054.
FEATURES Location/Qualifiers
source 1..1618
/db_xref="H-InvDB:HIT000034888"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13320 IMAGE:4093672"
/tissue_type="Brain, glioblastoma"
/clone_lib="NIH_MGC_57"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1618
/gene="SNX7"
/gene_synonym="DKFZP564F052"
/gene_synonym="MGC8717"
/db_xref="GeneID:51375"
/db_xref="HGNC:HGNC:14971"
CDS 59..1222
/gene="SNX7"
/gene_synonym="DKFZP564F052"
/gene_synonym="MGC8717"
/codon_start=1
/product="sorting nexin 7"
/protein_id="AAH10349.1"
/db_xref="GeneID:51375"
/db_xref="HGNC:HGNC:14971"
/translation="MDMNSFSPMMPTSPLSMINQIKFEDEPDLKDLFITVDEPESHVT
TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIV
KGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSPHKKQGPG
LLSRMGQTVRAVASSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYF
DEMKEYGPIHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEYVL
YSEMLMGVMKRRDQIQAELDSKVEVLTYKKADTDLLPEEIGKLEDKVECANNALKADW
ERWKQNMQNDIKLAFTDMAEENIHYYEQCLATWESFLTSQTNLHLEEASEDKP"
BASE COUNT 554 a 264 c 338 g 462 t
ORIGIN
1 gggggatctg gacgaggacg aggacgacct ggaggtgttc agcaaggatg cctcattgat
61 ggacatgaac tccttcagcc ctatgatgcc aacatcccct ttatcaatga taaaccaaat
121 caagtttgag gatgaaccag atttaaagga tctcttcatc acagttgatg aacctgaaag
181 tcatgttact acaatagaaa ctttcattac gtataggatt attactaaga catctcgtgg
241 ggaatttgac tccagtgaat ttgaagttag gagacgatat caagatttcc tttggttgaa
301 gggaaaactg gaagaagcac accccactct gattattcca ccattgccag aaaagtttat
361 agtaaaagga atggtggaac gctttaacga tgacttcatt gagacacgca ggaaggcttt
421 acataaattt ttgaaccgaa ttgctgatca tccaacttta acatttaatg aagacttcaa
481 aatttttctc actgcacaag cttgggaact ctctcctcac aagaagcaag gtcctggctt
541 gctaagcagg atggggcaaa ccgtcagagc tgttgcgtcc tcaatgagag gagttaaaaa
601 ccgcccagag gagttcatgg aaatgaataa ctttattgaa ctatttagcc agaaaataaa
661 tttgatagat aaaatatctc agagaattta taaggaagaa agggaatatt ttgatgaaat
721 gaaagaatat ggcccaattc atattctgtg gtcagcgtca gaagaggatc tggttgatac
781 tctaaaggat gttgccagct gcattgacag atgctgtaag gccactgaaa agcggatgtc
841 tggactctca gaggccctgc ttcctgttgt acatgagtac gtgctttata gtgaaatgtt
901 aatgggtgtt atgaaaagaa gagaccaaat acaagcagaa ctggattcca aagttgaagt
961 tttgacctat aaaaaggcag atactgatct gcttccagag gagattggaa aacttgaaga
1021 taaagtggaa tgtgctaata atgccctgaa agcagattgg gagagatgga aacaaaatat
1081 gcaaaatgat atcaagttag catttacaga tatggctgag gagaatatcc attattatga
1141 acagtgcctt gctacgtggg aatcgttcct tacatcacag accaaccttc acttggaaga
1201 agcctctgaa gataaacctt aatcccattg aggacttctg tttgatcttt gggagacagc
1261 atttattaac caaagttatt ctttctggat ctgccgtgtc cttataaagt ggatgaaaaa
1321 tgttttgtac ccatctggaa aaccaacaac ttgaaatctc aggtattcca ggtcactgac
1381 atgaatttga agatatatct atctgtatgg atatatatct atatgtatat agatatataa
1441 atacagagag atatctggct tggttttaat tatgttctta aatttgtgtg ccaataattg
1501 catatagatt ttttttctta aatatttgac tgtggaacat gccattttaa atatgttgta
1561 aggactgttt taataaaaag tttagtataa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//