LOCUS BC010108 1647 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromatin modifying protein 6, mRNA (cDNA clone
MGC:19477 IMAGE:3604039), complete cds.
ACCESSION BC010108
VERSION BC010108.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1647)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1647)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC010108.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: e Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52851447.
FEATURES Location/Qualifiers
source 1..1647
/db_xref="H-InvDB:HIT000034806"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19477 IMAGE:3604039"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1647
/gene="CHMP6"
/gene_synonym="FLJ11749"
/gene_synonym="VPS20"
/db_xref="GeneID:79643"
/db_xref="HGNC:HGNC:25675"
CDS 25..630
/gene="CHMP6"
/gene_synonym="FLJ11749"
/gene_synonym="VPS20"
/codon_start=1
/product="chromatin modifying protein 6"
/protein_id="AAH10108.1"
/db_xref="GeneID:79643"
/db_xref="HGNC:HGNC:25675"
/translation="MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERE
RALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVME
GLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEEL
SAITQEQIELPEVPSEPLPEKIPENVPVKARPRQAELVAAS"
BASE COUNT 350 a 510 c 521 g 266 t
ORIGIN
1 cccgggccag gggcgggcgc cgccatgggt aacctgttcg gccgcaagaa gcagagccgc
61 gtcacggagc aggacaaggc catcctgcaa ctgaagcagc agcgggacaa gctgaggcag
121 taccagaaga ggatcgccca gcagctggag cgcgagcgcg ccctggcccg gcagctgctg
181 cgggacggca ggaaggaacg ggccaagctg ctgctcaaga agaagcgata ccaggagcag
241 ctcctggaca ggacggagaa ccagatcagc agcctggagg ccatggttca gagtattgag
301 ttcacccaga tcgaaatgaa agtgatggag gggctgcagt ttggaaatga gtgtctgaac
361 aagatgcacc aggtgatgtc cattgaagag gtggagagga tcctggacga gacgcaggag
421 gccgtggagt accagcggca aatagacgag ctcctggcag gaagcttcac tcaggaggat
481 gaagacgcca tcctggagga gctgagcgca atcactcagg aacaaataga gctgccagag
541 gttccctccg agccccttcc tgagaagatc ccagaaaacg tccctgtcaa ggccaggccc
601 aggcaggcgg agctggtggc agcttcgtaa cgtggcctcg tcttgtggga ctcacgggga
661 tgccccaggg actgtggccc acagagagtt tgggtcacgg ccagcccctg accgggttcc
721 ctggagccca gtgcgcacgg tgctgagcag agctgcagcc acgcaggcgc attgcaggag
781 gactccagag cgtctcctgg agaccttgag cctgaacgca ctcaggcgcc actggcctgc
841 tctcagtccg gattaactct cgaccgagcc cagcttctgc cggttgtggg ctcccccggt
901 ggccgaggcc caggcccaac gcctctggtg ctgttcccct gcagtcccag ccccgcgtgg
961 ctcgcgctcg tctgtgagga agacacctcc agaccttggg gtccccgcgc ttcctcttgc
1021 tcctcgctgc tcccattagc tggtgcaggc ttccgttaag gggtccctcc cttggcctgg
1081 cttcccggcg cacctcagct tccctgctgg tggggggatc cccaggagac cagcatgtgc
1141 tgaacctctc cgtgcctctg cctccgcacc ctagacaccc acctccagtt tgaaggtggc
1201 gggccagggg ctttcttgct gaattgacga ctccgagagc cctgactccc gccttgccac
1261 tcacggctct gtccactagg gctcagccct gctgagaaag gacctccgat gcttgggaga
1321 cgctgctccg gcaggtgcag ccccggaagt ttgtccatgg gggtccccgc ggctggggct
1381 catggaactg cgagacccgg gaccctcctg ccctgcgggt ccccgagcca ccagcagcca
1441 ggaccggagg ctgtggggca tggcgtgact tctcgtgcac agggctggtt tggttatgag
1501 acgatctcgc tgggaccgcc cctgcccgtg gaaagccaca aggacaaagg gagcggccac
1561 ctcgaccccc agacagggcg gcccgtatta aagttggccc tgcacgccca aaaaaaaaaa
1621 aaaaaaaaaa aaaaaaaaaa aaaaaaa
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