LOCUS BC009924 2730 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:3292
IMAGE:3508049), complete cds.
ACCESSION BC009924
VERSION BC009924.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2730)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2730)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009924.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: o Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2730
/db_xref="H-InvDB:HIT000034674"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3292 IMAGE:3508049"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2730
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
CDS 170..1465
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/codon_start=1
/product="neuronal pentraxin II"
/protein_id="AAH09924.1"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
/translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP
AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA
RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE
VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA
FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA
NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT
GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA
NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL"
BASE COUNT 572 a 792 c 808 g 558 t
ORIGIN
1 gagcagcgcg gtgggtgcgg ctgtgagacg gcaggagact tctgccccgc ggtgcacgcg
61 accctcgaga cgacagcgcg gctactgcca gcagcgaagg cgcctcccgc ggagcgcccc
121 gacggcgccc gctcgcccat gccgagctga gcgcggcagc ggcggcggga tgctggcgct
181 gctggccgcc agcgtggcgc tcgccgtggc cgctggggcc caggacagcc cggcgcccgg
241 tagccgcttc gtgtgcacgg cactgccccc agaggcggtg cacgccggct gcccgctgcc
301 cgcgatgccc atgcagggcg gcgcgcagag tcccgaggag gagctgaggg ccgcggtgct
361 gcagctgcgc gagaccgtcg tgcagcagaa ggagacgctg ggcgcgcagc gcgaggccat
421 ccgcgagctc acgggcaagc tagcgcgctg cgaggggctg gcgggcggca aggcgcgcgg
481 cgcgggggcc acgggcaagg acactatggg cgacctgccg cgggaccccg gccacgtcgt
541 ggagcagctc agccgctcgc tgcagaccct caaggaccgc ctggagagcc tcgagcacca
601 gctcagagca aacgtgtcca atgctgggct gcccggcgac ttccgcgagg tgctccagca
661 gcggctgggg gagctggaga ggcagcttct gcgcaaggtg gcagagctgg aggacgagaa
721 gtccctgctg cacaatgaga cctcggctca ccggcagaag accgagagca ccctgaacgc
781 gctgctgcag agggtcaccg agctggagcg aggcaatagc gcctttaagt caccagatgc
841 gttcaaggtg tccctcccac tccgcacaaa ctacctatac ggcaagatca agaagacgct
901 gcctgagctg tacgccttca ccatctgcct gtggctgcgg tccagcgcct caccaggcat
961 tggcaccccc ttctcctatg cggtgccagg gcaggccaac gagatcgtgc tgatcgagtg
1021 gggcaacaac cccatcgagc tgctcatcaa cgacaaggtt gcgcagctgc ccctgtttgt
1081 cagtgacggc aagtggcacc acatctgtgt cacctggacg acacgggatg gcatgtggga
1141 ggcattccag gacggagaga agctgggcac tggggagaac ctggccccct ggcaccccat
1201 caagcccggg ggcgtgctga tccttggaca agagcaggac accgtggggg gtaggtttga
1261 tgccactcag gcatttgtcg gggagctcag ccagttcaac atatgggacc gcgtccttcg
1321 cgcacaagaa attgtcaaca tcgccaactg ctccacaaac atgccgggca acatcatccc
1381 gtgggtggac aataacgtcg atgtgttcgg aggggcctcc aagtggcccg tggagacgtg
1441 tgaggagcgt ctccttgact tgtagccgcc ttctcctctg tccaggaggc cgggatcagg
1501 ctgttgccat ggaagttcag ggccatagac tgccccactt aaactcttgt cagtctgggc
1561 tcagggttcc cagagctcat tccccaggaa tctctaagac cagggctggg gcagtgtctg
1621 tcactggctt gtttgttccc taccaatatt ctgttgctgt ttgaagtagt gccagggtcc
1681 cctgggaaga tgcccccaag acacctgccc caagtgggtg gatatctgcc ttcctgctgc
1741 aagtggaggc aggtccagca gcccctcttc agagcccctg taaatgctat cgcagcctga
1801 gtcctgccgc cttccagttc cttggtgtcc cgtgcacccc ttctgtctgt cccctttcat
1861 ggctgtgcag ccgtcccgct ggagtggcca tgtcccttgt gcattgagtg catccccgct
1921 ggtgactaag ctcgcagcaa gcggctaccc cccgatctgc aaaagggcct ctccctttgt
1981 gttctataca ttgtgaatct tcccgtctga agaacgccca gcctgcccag acaaagcccc
2041 gccttcccca aagcagaggg gctgtctgtg tctccagaaa ggggacatcg ggggggaggg
2101 gggctcagaa aggagaaggg ctgtgatctc cggtcccttc ccccatcatc cttccttaga
2161 ctgatgcttt gactgaatca tcactagcta tggcattaaa aggcctctct tctcatctgg
2221 tgccaaaggt tccgttgcag ctttttacaa ccatccggtg tggtttggag gatttgtttt
2281 ttttttttcc caacagaaaa gaacagccat tagaagaagg ctcccatttt ctgatgttcc
2341 gccccactgt gaagagtgtg ctcgttttaa attcatgttg attcttgtaa gcactggact
2401 gtcttcatca agtatttccc tacagaactc ctcaagaaaa cagagatcat ttggctagag
2461 attgtctgag tgactccaag ctactcactg tattggacgg gagtagtaat ttattttaaa
2521 gataaagtga ctaagtgggg aaatttataa agctaaatat tatatatttt atttttcata
2581 catgtttgaa gtgcaaatct gtggatattc catttgtagg accaagtcga catgcccatc
2641 ctgacattgt atgctacgag aactcttctg atgatggaat ttcgattaaa gtgcactgaa
2701 agatgaaaaa aaaaaaaaaa aaaaaaaaaa
//