LOCUS BC009840 859 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens splicing factor, arginine/serine-rich 11, mRNA (cDNA
clone IMAGE:3845506), partial cds.
ACCESSION BC009840
VERSION BC009840.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 859)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 859)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009840.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: b Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111060.
FEATURES Location/Qualifiers
source 1..859
/db_xref="H-InvDB:HIT000087389"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3845506"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>859
/gene="SFRS11"
/gene_synonym="dJ677H15.2"
/gene_synonym="p54"
/db_xref="GeneID:9295"
/db_xref="MIM:602010"
CDS 119..>859
/gene="SFRS11"
/gene_synonym="dJ677H15.2"
/gene_synonym="p54"
/codon_start=1
/product="SFRS11 protein"
/protein_id="AAH09840.1"
/db_xref="GeneID:9295"
/db_xref="MIM:602010"
/translation="MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSA
SSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVD
RALIVVPYAEGVIPDEAKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGA
PTLDPALAALGLPGANLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKE
IEEAMKRVREAQSLISAAIEPDKKKKKKK"
misc_feature 218..439
/gene="SFRS11"
/gene_synonym="dJ677H15.2"
/gene_synonym="p54"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 191 a 231 c 218 g 219 t
ORIGIN
1 gaggctgtag catcggacac cctcctctct cccgcaatcc ggttcctctt ccccctcctt
61 ctcactgttt gttgtgtgtt tgatgtgtta aagcaggagc gagaacccga gcagcgccat
121 gagcaacact accgtcgtcc ccagcactgc aggtccgggc cccagcggcg ggcccggtgg
181 cggaggtggt ggtggcggcg gaggcggcgg caccgaggta atccaggtga ctaatgtctc
241 cccgagcgct agctctgagc agatgcggac tctcttcggt ttcctaggca agatcgacga
301 actgcgcctc ttcccgccgg atgattcgcc tttgccagtc tcatctcgtg tctgctttgt
361 taagttccat gatccagact cagcagttgt ggcacagcat ctgacaaaca ctgtattcgt
421 tgacagagct ttgatagtcg taccatatgc agaaggagtt attcctgatg aagctaaagc
481 tttgtctctg ttggcaccag ctaatgcagt ggcaggtctt ctgcctggtg gtggactcct
541 gcctactcct aacccactta cccagattgg cgctgttcca ctggctgctt tgggggctcc
601 tactcttgat cctgcccttg ctgcacttgg gcttcctgga gcaaacttga actctcagtc
661 tcttgctgca gatcagttgc tgaagcttat gagtactgtt gatcccaagt tgaatcatgt
721 agctgctggt ctcgtttcac caagtctgaa atcggatacc tctagtaaag aaatagagga
781 agctatgaaa agagtacgag aagcacagtc cctaatttct gctgctatag aaccagataa
841 gaaaaaaaaa aaaaaaaaa
//