LOCUS BC009822 1559 bp mRNA linear HUM 01-NOV-2004
DEFINITION Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone IMAGE:3954338),
complete cds.
ACCESSION BC009822
VERSION BC009822.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1559)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1559)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009822.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: j Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1559
/db_xref="H-InvDB:HIT000034596"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3954338"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1559
/gene="NUP160"
/db_xref="GeneID:23279"
/db_xref="MIM:607614"
CDS 188..760
/gene="NUP160"
/codon_start=1
/product="NUP160 protein"
/protein_id="AAH09822.1"
/db_xref="GeneID:23279"
/db_xref="MIM:607614"
/translation="MAAAGALERSFVELSGAERERPRHFREFTVCSIGTANAVAGAVK
YSESAGGFYYVESGKLFSVTRNRFIHWKTSGDTLELMEESLDINLLNNAIRLKFQNCS
VLPGGVYVSETQNRVIILMLTNQTVHRLLLPHPSRMYRSVSWLSAISFISQITLGVTN
VVLERCLLELKEIWILVIPHQAYFDSYRLK"
BASE COUNT 475 a 324 c 342 g 418 t
ORIGIN
1 ctcttctgga ttcctcgctg cccaccctca ttctcccggt ggaagcctcg caacgaaggg
61 ccggagccgc ctttctgctc ccggaatgct tcacctgtcc gcagctccgc ccgccccacc
121 cccggaagtg acggcgaccg cgcggccctg cctttgttcc gttgggcgtc gcggcgacgg
181 cgggaagatg gcggcggcgg gagccctgga acggagcttc gtggagctaa gcggagctga
241 gcgcgaaagg ccgaggcact ttcgggaatt cacagtctgc agcattggga ctgcaaatgc
301 cgtggctggc gccgtaaaat acagtgaaag cgcgggaggc ttttactacg tggagagtgg
361 caagttgttc tccgtaacca gaaacaggtt cattcattgg aagacctctg gagatacatt
421 ggagctgatg gaggagtcac tggacataaa tctgttgaat aatgccattc gcctaaaatt
481 ccaaaattgc agtgttttac ctggaggggt ttatgtctct gagactcaga atcgtgtgat
541 aatcttgatg ttaaccaatc aaacagtgca caggttactt ttaccacacc cctcccggat
601 gtataggagt gtaagttggc taagtgcaat atcttttatt tcccaaatta ctctgggtgt
661 cacaaatgta gtgctggagc gatgtctttt ggaattgaag gaaatttgga ttctcgttat
721 ccctcaccaa gcatactttg atagctaccg cttaaaatga tcaggcatac attttaagtt
781 gagaattagt tttcattaag aagaatagct ttcttaaact tgacagtttt ttactttaaa
841 aactttttta gcaatagaga ggaactgagc aaaattctgg ttattttgat ttaatagatt
901 tttcttttta attactcaac aggagttggt agttgacagt cagatgcagt caatattcac
961 tgacattgga aaagttgatt tcacagatcc ttgcaactat cagttaattc cagcagtacc
1021 tggaatatct cctaattcca ccgcctctac agcctggctc agcagtgatg gggaggccct
1081 gtttgcctta ccatgtgctt ctgggggaat ctttgttctt aagctacctc cttatgacat
1141 acctggtaag aatgggaact gagcatggat ttaactttaa acaaggaatg ttaacattga
1201 aacagttcaa cctcgtcatc caatgcaggg attgcatctc tactgccccg gaactggtca
1261 ttcattattg cttgcctaat gagtccctaa tgctttactt ttatacagtg gataaggaac
1321 tataaagcat attggagcac ggaaaaacaa atagacaagt ataagacagc ctattctaaa
1381 tcttgtagta gagatgggtt gcctaattgt ctgccctgag atggaggcat tataacatta
1441 taattaaatt aattgaaaca aagacattaa ataccctgca ccaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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