LOCUS BC009758 1800 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transmembrane protein 49, mRNA (cDNA clone MGC:11204
IMAGE:3927937), complete cds.
ACCESSION BC009758
VERSION BC009758.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1800)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1800)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009758.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: b Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070348.
FEATURES Location/Qualifiers
source 1..1800
/db_xref="H-InvDB:HIT000034553"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11204 IMAGE:3927937"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1800
/gene="TMEM49"
/gene_synonym="DKFZP566I133"
/gene_synonym="VMP1"
/db_xref="GeneID:81671"
/db_xref="HGNC:HGNC:29559"
CDS 125..1345
/gene="TMEM49"
/gene_synonym="DKFZP566I133"
/gene_synonym="VMP1"
/codon_start=1
/product="transmembrane protein 49"
/protein_id="AAH09758.1"
/db_xref="GeneID:81671"
/db_xref="HGNC:HGNC:29559"
/translation="MAENGKNCDQRRVAMNKEHHNGNFTDPSSVNEKKRREREERQNI
VLWRQPLITLQYFSLEILVILKEWTSKLWHRQSIVVSFLLLLAVLIATYYVEGVHQQY
VQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSVNFPEP
PYPDQIICPDEEGTEGTISLWSIISKVRIEACMWGIGTAIGELPPYFMARAARLSGAE
PDDEEYQEFEEMLEHAESAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGI
TCGHFLVPFWTFFGATLIGKAIIKMHIQKIFVIITFSKHIVEQMVAFIGAVPGIGPSL
QKPFQEYLEAQRQKLHHKSEMGTPQGENWLSWMFEKLVVVMVCYFILSIINSMAQSYA
KRIQQRLNSEEKTK"
BASE COUNT 524 a 354 c 414 g 508 t
ORIGIN
1 agcgggttcc ggttgtctgg agcccagcgg cgggtgtgag agtccgtaag gagcagcttc
61 caggatcctg agatccggag cagccggggt cggagcggct cctcaagagt tactgatcta
121 tgaaatggca gagaatggaa aaaattgtga ccagagacgt gtagcaatga acaaggaaca
181 tcataatgga aatttcacag acccctcttc agtgaatgaa aagaagagga gggagcggga
241 agaaaggcag aatattgtcc tgtggagaca gccgctcatt accttgcagt atttttctct
301 ggaaatcctt gtaatcttga aggaatggac ctcaaaatta tggcatcgtc aaagcattgt
361 ggtgtctttt ttactgctgc ttgctgtgct tatagctacg tattatgttg aaggagtgca
421 tcaacagtat gtgcaacgta tagagaaaca gtttcttttg tatgcctact ggataggctt
481 aggaattttg tcttctgttg ggcttggaac agggctgcac acctttctgc tttatctggg
541 tccacatata gcctcagtta cattagctgc ttatgaatgc aattcagtta attttcccga
601 accaccctat cctgatcaga ttatttgtcc agatgaagag ggcactgaag gaaccatttc
661 tttgtggagt atcatctcaa aagttaggat tgaagcctgc atgtggggta tcggtacagc
721 aatcggagag ctgcctccat atttcatggc cagagcagct cgcctctcag gtgctgaacc
781 agatgatgaa gagtatcagg aatttgaaga gatgctggaa catgcagagt ctgcacaaga
841 ctttgcctcc cgggccaaac tggcagttca aaaactagta cagaaagttg gattttttgg
901 aattttggcc tgtgcttcaa ttccaaatcc tttatttgat ctggctggaa taacgtgtgg
961 acactttctg gtaccttttt ggaccttctt tggtgcaacc ctaattggaa aagcaataat
1021 aaaaatgcat atccagaaaa tttttgttat aataacattc agcaagcaca tagtggagca
1081 aatggtggct ttcattggtg ctgtccccgg cataggtcca tctctgcaga agccatttca
1141 ggagtacctg gaggctcaac ggcagaagct tcaccacaaa agcgaaatgg gcacaccaca
1201 gggagaaaac tggttgtcct ggatgtttga aaagttggtc gttgtcatgg tgtgttactt
1261 catcctatct atcattaact ccatggcaca aagttatgcc aaacgaatcc agcagcggtt
1321 gaactcagag gagaaaacta aataagtaga gaaagtttta aactgcagaa attggagtgg
1381 atgggttctg ccttaaattg ggaggactcc aagccgggaa ggaaaattcc cttttccaac
1441 ctgtatcaat ttttacaact tttttcctga aagcagttta gtccatactt tgcactgaca
1501 tactttttcc ttctgtgcta aggtaaggta tccaccctcg atgcaatcca ccttgtgttt
1561 tcttagggtg gaatgtgatg ttcagcagca aacttgcaac agactggcct tctgtttgtt
1621 actttcaaaa ggcccacatg atacaattag agaattccca ccgcacaaaa aaagttccta
1681 agtatgttaa atatgtcaag ctttttaggc ttgtcacaaa tgattgcttt gttttcctaa
1741 gtcatcaaaa tgtatataaa ttatctagat tggataacaa aaaaaaaaaa aaaaaaaaaa
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