LOCUS BC009744 1733 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens cold shock domain protein A, mRNA (cDNA clone
MGC:10359 IMAGE:3835480), complete cds.
ACCESSION BC009744
VERSION BC009744.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1733)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1733)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC009744.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359983.
FEATURES Location/Qualifiers
source 1..1733
/db_xref="H-InvDB:HIT000034544"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10359 IMAGE:3835480"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1733
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/db_xref="GeneID:8531"
/db_xref="MIM:603437"
CDS 197..1108
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/codon_start=1
/product="CSDA protein"
/protein_id="AAH09744.1"
/db_xref="GeneID:8531"
/db_xref="MIM:603437"
/translation="MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAA
APAPAAHVAGNPGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRN
GYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSLGDGETVEFDVVEGEKGAEAANVTGP
DGVPVEGSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGAQLQGPVHRNPTY
RPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAP
SQDGKEAKAGEAPTENPAPPTQQSSAE"
misc_feature 464..676
/gene="CSDA"
/gene_synonym="DBPA"
/gene_synonym="ZONAB"
/note="cold; Region: Cold Shock RNA binding domain of the
OB fold"
/db_xref="CDD:LOAD_cold"
BASE COUNT 497 a 481 c 433 g 322 t
ORIGIN
1 gagcccaaga gcgagcgcgc agcacgaagc tcgagccgcc tccgccgcgc gaccccacct
61 cggccgccgc cgcctgcgcc gcgagatccg ccccggcctc cccgagagcg agccccggcc
121 gccgcgacca ccagccgcgc taaccgccga ccaaccgcca ccgaggcgcc tgagcgagag
181 cagaggagga ggaggcatga gtgaggcggg cgaggccacc accaccacca ccaccaccct
241 cccgcaggct ccgacggagg cggccgccgc ggctccccag gaccccgcgc ccaagagccc
301 ggtgggcagc ggtgcgcccc aggccgcggc cccggcgccc gccgcccacg tcgcaggaaa
361 ccccggtggg gacgcggccc ccgcagccac gggcaccgcg gccgccgcct ctttagccgc
421 cgccgccggc agcgaagacg cggagaaaaa agttctcgcc accaaagtcc ttggcactgt
481 caaatggttc aacgtcagaa atggatatgg atttataaat cgaaatgaca ccaaagaaga
541 tgtatttgta catcagactg ccatcaagaa gaataaccca cggaaatatc tgcgcagtct
601 aggagatgga gaaactgtag agtttgatgt ggttgaagga gagaagggtg cagaagctgc
661 caatgtgact ggcccggatg gagttcctgt ggaagggagt cgttacgctg cagatcggcg
721 ccgttacaga cgtggctact atggaaggcg ccgtggccct ccccggaatg ctggtgagat
781 tggagagatg aaggatggag tcccagaggg agcacaactt cagggaccgg ttcatcgaaa
841 tccaacttac cgcccaaggt accgtagcag gggacctcct cgcccacgac ctgccccagc
901 agttggagag gctgaagata aagaaaatca gcaagccacc agtggtccaa accagccgtc
961 tgttcgccgt ggatatcggc gtccctacaa ttaccggcgt cgcccgcgtc ctcctaacgc
1021 tccttcacaa gatggcaaag aggccaaggc aggtgaagca ccaactgaga accctgctcc
1081 acccacccag cagagcagtg ctgagtaaca ccaggctcct caggcacctt caccatcggc
1141 aggtgaccta aagaattaat gaccattcag aaataaagca aaaagcaggc cacaacctta
1201 accaacacca aagaaacatc caagcaataa agtggaagac taaccaagat ttggacattg
1261 gaatgtttac tgttattctt taagaaacat ctacaaaaag aaaatgtcaa caaatttttc
1321 cagcaagctg agaacctggg aattcctgca cggaagacaa gagagtagcc tctccagttt
1381 cagcaaccgc taggtttcta ttttttttcc tggtttttac tgttttggta atatatatat
1441 tgaaacaaga aatattaata ccacatgggg agaaccccaa ccaaagaaat ctgaaatata
1501 tagtaaatgc ttttttttcc gtttttgttc attttggatg ctggtgctaa acctccaagt
1561 gtcatgattt aaaaaaaaaa aaaaatttat gtccttctta tttatttcta ggatgagggg
1621 aggataacat ttttgctttc ttatgtgact ctctttgaaa atgtgcagta agaaattcct
1681 caaaaataaa atttttaccc ttcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//