LOCUS BC009682 2025 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens SMAD family member 5, mRNA (cDNA clone MGC:8960
IMAGE:3906006), complete cds.
ACCESSION BC009682
VERSION BC009682.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2025)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2025)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC009682.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47778930.
FEATURES Location/Qualifiers
source 1..2025
/db_xref="H-InvDB:HIT000034502"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8960 IMAGE:3906006"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2025
/gene="SMAD5"
/gene_synonym="Dwfc"
/gene_synonym="JV5-1"
/db_xref="GeneID:4090"
/db_xref="HGNC:HGNC:6771"
/db_xref="MIM:603110"
CDS 169..1566
/gene="SMAD5"
/gene_synonym="Dwfc"
/gene_synonym="JV5-1"
/codon_start=1
/product="SMAD family member 5"
/protein_id="AAH09682.1"
/db_xref="GeneID:4090"
/db_xref="HGNC:HGNC:6771"
/db_xref="MIM:603110"
/translation="MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKK
KKGAMEELEKALSSPGQPSKCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHH
ELKPLDICEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHNEFNPQHSLLVQFRNL
SHNEPHMPQNATFPDSFHQPNNTPFPLSPNSPYPPSPASSTYPNSPASSGPGSPFQLP
ADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSISSRDVQPVAYEEPKHWCSIVY
YELNNRVGEAFHASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGV
HLYYVGGEVYAECLSDSSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLL
AQSVNHGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKV
LTQMGSPLNPISSVS"
BASE COUNT 581 a 420 c 409 g 615 t
ORIGIN
1 acttgaccca atgaaagaag catatggcac ttgtgaagat aaatgttact cctccctttt
61 taattggaac ttctgcttag gacctgtgta tgacgtttca cctgtgatct gttctttcgg
121 tagccactga ctttgagtta caggaaggtc tccgaagatt tgtgtcaaat gacgtcaatg
181 gccagcttgt tttcttttac tagtccagca gtaaagcgat tgttgggctg gaaacaaggt
241 gatgaggagg agaaatgggc agaaaaggca gttgatgctt tggtgaagaa actaaaaaag
301 aaaaagggtg ccatggagga actggagaaa gccttgagca gtccaggaca gccgagtaaa
361 tgtgtcacta ttcccagatc tttagatgga cgcctgcagg tttctcacag aaaaggctta
421 ccccatgtta tatattgtcg tgtttggcgc tggccggatt tgcagagtca tcatgagcta
481 aagccgttgg atatttgtga atttcctttt ggatctaagc aaaaagaagt ttgtatcaac
541 ccataccact ataagagagt ggagagtcca gtcttacctc cagtattagt gcctcgtcat
601 aatgaattca atccacaaca cagccttctg gttcagttta ggaacctgag ccacaatgaa
661 ccacacatgc cacaaaatgc cacgtttcca gattctttcc accagcccaa caacactcct
721 tttcccttat ctccaaacag cccttatccc ccttctcctg ctagcagcac atatcccaac
781 tccccagcaa gttctggacc aggaagtcca tttcagctcc cagctgatac gcctcctcct
841 gcctatatgc cacctgatga tcagatgggt caagataatt cccagcctat ggatacaagc
901 aataatatga ttcctcagat tatgcccagt atatccagca gggatgttca gcctgttgcc
961 tatgaagagc ctaaacattg gtgttcaata gtctactatg aattaaacaa tcgtgttgga
1021 gaagcttttc atgcatcttc tactagtgtg ttagtagatg gattcacaga tccttcaaat
1081 aacaaaagta gattctgctt gggtttgttg tcaaatgtta atcgtaattc gacaattgaa
1141 aacactaggc gacatattgg aaaaggtgtt catctgtact atgttggtgg agaggtgtat
1201 gcggaatgcc tcagtgacag cagcatattt gtacagagta ggaactgcaa ctttcatcat
1261 ggctttcatc ccaccactgt ctgtaagatt cccagcagct gcagcctcaa aatttttaac
1321 aatcaggagt ttgctcagct tctggctcaa tctgtcaacc atgggtttga ggcagtatat
1381 gagctcacca aaatgtgtac cattcggatg agttttgtca agggttgggg agcagaatat
1441 caccggcagg atgtaaccag caccccatgt tggattgaga ttcatcttca tgggcctctt
1501 cagtggctgg ataaagtcct tactcagatg ggctcccctc tgaaccccat atcttctgtt
1561 tcataatgca gaagtattct tttcaattat attgttagtg gacttgtttt aattttagag
1621 aaactttgag tacagatact gtgagcttac attgaaaaca gatattacag cttatttttt
1681 tctacataat tgtgaccaat acatttgtat tttgtgatga atctacattt gtttgtattc
1741 atgttcatgt gattaactct tagaagtgtt gtaaaagatg cagagtaagt attatgcccc
1801 agttcagaaa tttggcattg atcttaaact ggaacatgct tttactttat tgccctaaca
1861 attttttatt aaatttattt gaaaatgcat cacatgatga aaaattatag tagcttataa
1921 gagggcatat acagtgaaga gtaagttttc cctcctactc tcgatcttcc agaagctgta
1981 cttttaccag tttctttgtc ccaccaactt aaaaaaaaaa aaaaa
//