LOCUS BC009501 2068 bp mRNA linear HUM 17-NOV-2006 DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans), mRNA (cDNA clone MGC:16536 IMAGE:4040230), complete cds. ACCESSION BC009501 VERSION BC009501.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2068) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2068) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC009501.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 25 Row: n Column: 8. FEATURES Location/Qualifiers source 1..2068 /db_xref="H-InvDB:HIT000034408" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:16536 IMAGE:4040230" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_18" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2068 /gene="APH1A" /gene_synonym="6530402N02Rik" /gene_synonym="APH-1A" /gene_synonym="CGI-78" /db_xref="GeneID:51107" /db_xref="HGNC:HGNC:29509" /db_xref="MIM:607629" CDS 191..934 /gene="APH1A" /gene_synonym="6530402N02Rik" /gene_synonym="APH-1A" /gene_synonym="CGI-78" /codon_start=1 /product="anterior pharynx defective 1 homolog A (C. elegans)" /protein_id="AAH09501.1" /db_xref="GeneID:51107" /db_xref="HGNC:HGNC:29509" /db_xref="MIM:607629" /translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY AVTVSMGLWAFITAGGSLRSIQRSLLCKD" BASE COUNT 358 a 577 c 556 g 577 t ORIGIN 1 gaggaagtgg cgcggacctt catttggggt ttcggttccc ccccttcccc ttccccgggg 61 tctgggggtg acattgcacc gcgcccctcg tggggtcgcg ttgccacccc acgcggactc 121 cccagctggc gcgcccctcc catttgcctg tcctggtcag gcccccaccc cccttcccac 181 ctgaccagcc atgggggctg cggtgttttt cggctgcact ttcgtcgcgt tcggcccggc 241 cttcgcgctt ttcttgatca ctgtggctgg ggacccgctt cgcgttatca tcctggtcgc 301 aggggcattt ttctggctgg tctccctgct cctggcctct gtggtctggt tcatcttggt 361 ccatgtgacc gaccggtcag atgcccggct ccagtacggc ctcctgattt ttggtgctgc 421 tgtctctgtc cttctacagg aggtgttccg ctttgcctac tacaagctgc ttaagaaggc 481 agatgagggg ttagcatcgc tgagtgagga cggaagatca cccatctcca tccgccagat 541 ggcctatgtt tctggtctct ccttcggtat catcagtggt gtcttctctg ttatcaatat 601 tttggctgat gcacttgggc caggtgtggt tgggatccat ggagactcac cctattactt 661 cctgacttca gcctttctga cagcagccat tatcctgctc catacctttt ggggagttgt 721 gttctttgat gcctgtgaga ggagacggta ctgggctttg ggcctggtgg ttgggagtca 781 cctactgaca tcgggactga cattcctgaa cccctggtat gaggccagcc tgctgcccat 841 ctatgcagtc actgtttcca tggggctctg ggccttcatc acagctggag ggtccctccg 901 aagtattcag cgcagcctct tgtgtaagga ctgactacct ggactgatcg cctgacagat 961 cccacctgcc tgtccactgc ccatgactga gcccagcccc agcccgggtc cattgcccac 1021 attctctgtc tccttctcgt cggtctaccc cactacctcc agggttttgc tttgtccttt 1081 tgtgaccgtt agtctctaag ctttaccagg agcagcctgg gttcagccag tcagtgactg 1141 gtgggtttga atctgcactt atccccacca cctggggacc cccttgttgt gtccaggact 1201 ccccctgtgt cagtgctctg ctctcaccct gcccaagact cacctccctt cccctctgca 1261 ggccgacggc aggaggacag tcgggtgatg gtgtattctg ccctgcgcat cccacccgag 1321 gactgaggga acctaggggg gacccctggg cctggggtgc cctcctgatg tcctcgccct 1381 gtatttctcc atctccagtt ctggacagtg caggttgcca agaaaaggga cctagtttag 1441 ccattgccct ggagatgaaa ttaatggagg ctcaaggata gatgagctct gagtttctca 1501 gtactccctc aagactggac atcttggtct ttttctcagg cctgaggggg aaccattttt 1561 ggtgtgataa ataccctaaa ctgccttttt ttcttttttg aggtgggggg agggaggagg 1621 tatattggaa ctcttctaac ctccttgggc tatattttct ctcctcgagt tgctcctcat 1681 ggctgggctc atttcggtcc ctttctcctt ggtcccagac cttgggggaa aggaaggaag 1741 tgcatgtttg ggaactggca ttactggaac taatggtttt aacctcctta accaccagca 1801 tccctcctct ccccaaggtg aagtggaggg tgctgtggtg agctggccac tccagagctg 1861 cagtgccact ggaggagtca gactaccatg acatcgtagg gaaggagggg agattttttt 1921 gtagttttta attggggtgt gggaggggcg gggaggtttt ctataaactg tatcattttc 1981 tgctgagggt ggagtgtccc atccttttaa tcaaggtgat tgtgattttg actaataaaa 2041 aagaatttgt aaaaaaaaaa aaaaaaaa //