LOCUS BC009483 2061 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens interferon regulatory factor 1, mRNA (cDNA clone
MGC:15355 IMAGE:3623414), complete cds.
ACCESSION BC009483
VERSION BC009483.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2061)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2061)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009483.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504720.
FEATURES Location/Qualifiers
source 1..2061
/db_xref="H-InvDB:HIT000034397"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15355 IMAGE:3623414"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2061
/gene="IRF1"
/gene_synonym="IRF-1"
/gene_synonym="MAR"
/db_xref="GeneID:3659"
/db_xref="HGNC:HGNC:6116"
/db_xref="MIM:147575"
CDS 204..1181
/gene="IRF1"
/gene_synonym="IRF-1"
/gene_synonym="MAR"
/codon_start=1
/product="interferon regulatory factor 1"
/protein_id="AAH09483.1"
/db_xref="GeneID:3659"
/db_xref="HGNC:HGNC:6116"
/db_xref="MIM:147575"
/translation="MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKG
SSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDD
HSSYTVPGYMQDLEVEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMP
STSEATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKE
EPEIDSPGGDIGLSLQRVFTDLKNMDATWLDSLLTPVRLPSIQAIPCAP"
BASE COUNT 497 a 583 c 556 g 425 t
ORIGIN
1 gtgcgcccga gccccgccga agcgaggcca cccggagccg tgcccagtcc acgccggccg
61 tgcccggcgg ccttaagaac ccggcaacct ctgccttctt ccctcttcca cttggagtcg
121 cgctccgcgc gccctcactg cagcccctgc gtcgccggga ccctcgcgcg cgaccgccga
181 atcgctcctg cagcagagcc aacatgccca tcactcggat gcgcatgaga ccctggctag
241 agatgcagat taattccaac caaatcccgg ggctcatctg gattaataaa gaggagatga
301 tcttccagat cccatggaag catgctgcca agcatggctg ggacatcaac aaggatgcct
361 gtttgttccg gagctgggcc attcacacag gccgatacaa agcaggggaa aaggagccag
421 atcccaagac gtggaaggcc aactttcgct gtgccatgaa ctccctgcca gatatcgagg
481 aggtgaaaga ccagagcagg aacaagggca gctcagctgt gcgagtgtac cggatgcttc
541 cacctctcac caagaaccag agaaaagaaa gaaagtcgaa gtccagccga gatgctaaga
601 gcaaggccaa gaggaagtca tgtggggatt ccagccctga taccttctct gatggactca
661 gcagctccac tctgcctgat gaccacagca gctacacagt tccaggctac atgcaggact
721 tggaggtgga gcaggccctg actccagcac tgtcgccatg tgctgtcagc agcactctcc
781 ccgactggca catcccagtg gaagttgtgc cggacagcac cagtgatctg tacaacttcc
841 aggtgtcacc catgccctcc acctctgaag ctacaacaga tgaggatgag gaagggaaat
901 tacctgagga catcatgaag ctcttggagc agtcggagtg gcagccaaca aacgtggatg
961 ggaaggggta cctactcaat gaacctggag tccagcccac ctctgtctat ggagacttta
1021 gctgtaagga ggagccagaa attgacagcc caggggggga tattgggctg agtctacagc
1081 gtgtcttcac agatctgaag aacatggatg ccacctggct ggacagcctg ctgaccccag
1141 tccggttgcc ctccatccag gccattccct gtgcaccgta gcagggcccc tgggcccctc
1201 ttattcctct aggcaagcag gacctggcat catggtggat atggtgcaga gaagctggac
1261 ttctgtgggc ccctcaacag ccaagtgtga ccccactgcc aagtggggat ggggcctccc
1321 tccttgggtc attgacctct cagggcctgg caggccagtg tctgggtttt tcttgtggtg
1381 taaagctggc cctgcctcct gggaagatga ggttctgaga ccagtgtatc aggtcaggga
1441 cttggacagg agtcagtgtc tggctttttc ctctgagccc agctgcctgg agagggtctc
1501 gctgtcactg gctggctcct aggggaacag accagtgacc ccagaaaagc ataacaccaa
1561 tcccagggct ggctctgcac taagagaaaa ttgcactaaa tgaatctcgt tcccaaagaa
1621 ctaccccctt ttcagctgag ccctggggac tgttccaaag ccagtgaaat gtgaaggaaa
1681 gtggggtcct tcggggcgat gctccctcag cctcagagga gctctaccct gctccctgct
1741 ttggctgagg ggcttgggaa aaaaacttgg cactttttcg tgtggatctt gccacatttc
1801 tgatcagagg tgtacactaa catttccccc gagctcttgg cctttgcatt tatttataca
1861 gtgccttgct cggcgcccac caccccctca agccccagca gccctcaaca ggcccaggga
1921 gggaagtgtg agcgccttgg tatgacttaa aattggaaat gtcatctaac cattaagtca
1981 tgtgtgaaca cataggacgt gtgtaaatat gtacatttgt ctttttataa aaagtaaatt
2041 gttaaaaaaa aaaaaaaaaa a
//