LOCUS BC009458 1345 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens BARX homeobox 1, mRNA (cDNA clone IMAGE:3536767),
complete cds.
ACCESSION BC009458
VERSION BC009458.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1345)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1345)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: j Column: 9
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1345
/db_xref="H-InvDB:HIT000034376"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3536767"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1345
/gene="BARX1"
/db_xref="GeneID:56033"
/db_xref="HGNC:HGNC:955"
/db_xref="MIM:603260"
CDS 490..792
/gene="BARX1"
/codon_start=1
/product="BARX1 protein"
/protein_id="AAH09458.1"
/db_xref="GeneID:56033"
/db_xref="HGNC:HGNC:955"
/db_xref="MIM:603260"
/translation="MGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK
KIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVPGEPSDRSRED"
BASE COUNT 271 a 428 c 441 g 205 t
ORIGIN
1 cctcgtgccg ggggaactcc aggacagaac acggacaggg tcgaggagat actccctccc
61 aaatctgggg aacggcaacg ttgaggaggg tctccatctg cgccaccggc gccgaccggc
121 agggcgtgga ggttttgcgc tgggaggcac tggccaagcg cgagcacccc cgcggcacgt
181 ggtgcggcag tccctggggc agaggagcgc ggccgtagct cacccgggtc ctcattctct
241 ttcttcgcag ccgtgctgaa ggccgagcag gcggcggtgt tcaagttccc actggcgccg
301 ctgggctgtt cagggctgag ctctgcgttg ctggcggcag ggcccgggct gcccggcgcc
361 gcgggtgcgc cacacctgcc gctcgagttg cagctccgcg ggaagctgga ggcggcaggc
421 cctggggagc caggcaccaa agccaagaag gggcgtcgga gccgcactgt gttcaccgag
481 ctgcagctga tgggcctgga gaaacgcttc gagaagcaga agtacctttc cacgccggac
541 agaatagatc ttgctgagtc cctgggcctg agccagttgc aggtgaagac gtggtaccag
601 aatcggagga tgaagtggaa gaaaatagtg ctgcagggcg gcggcctgga gtctcccacc
661 aagcccaagg ggcggcccaa gaagaactca attccaacga gcgagcagct tactgagcag
721 gagcgcgcca aggatgcaga gaaaccggcg gaggtgccgg gcgagcccag cgacaggagc
781 cgcgaggact gagggcggta tacggtgcgg ggcctgggat gcccgcgcca cccgcagccc
841 cctcactcgg cggaaacccg cgagccggcc cttccgcgtc caagaagttt acttcctaag
901 cctttttatt atgatcttga atgcggacaa ttggggccaa acgaggaagg acacagaccc
961 aaaagccaga cccaggtccc agcgcgcttc tgggctctaa cctgggagac tcgcatccag
1021 cccggcggaa gctacagtct ctaccctgag ctccgtggcg cagagcgctc cacgcgtatt
1081 cacgccccgc tcctcgcctg cacccccacc ccgtctgggg cctgccctcc cggccgggga
1141 gcctccaggc acacacccgc ttctggacgt cggggaccca gcggttgggc tcaggccaca
1201 acggcctgag attgccccgg ggcaacccgt cggctcggcc tggaggccgg gtccccgatg
1261 tcgctggggc ccctaccccc tcttgcgaag acggtgactt tttttccaat aaaatatttt
1321 atgacacaaa aaaaaaaaaa aaaaa
//