LOCUS BC009368 3326 bp mRNA linear HUM 19-MAR-2007 DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, mRNA (cDNA clone MGC:15280 IMAGE:4110499), complete cds. ACCESSION BC009368 VERSION BC009368.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3326) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3326) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC009368.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 26 Row: b Column: 15 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21264349. FEATURES Location/Qualifiers source 1..3326 /db_xref="H-InvDB:HIT000034314" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:15280 IMAGE:4110499" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3326 /gene="SMARCD1" /gene_synonym="BAF60A" /gene_synonym="CRACD1" /gene_synonym="Rsc6p" /db_xref="GeneID:6602" /db_xref="HGNC:HGNC:11106" /db_xref="MIM:601735" CDS 238..1668 /gene="SMARCD1" /gene_synonym="BAF60A" /gene_synonym="CRACD1" /gene_synonym="Rsc6p" /codon_start=1 /product="SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" /protein_id="AAH09368.3" /db_xref="GeneID:6602" /db_xref="HGNC:HGNC:11106" /db_xref="MIM:601735" /translation="MGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPGYGG NPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELV PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAED GEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVE WHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVI IQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIII NHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETI NQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQE AVCRYFYSKVQQRRQELEQALGIRNT" BASE COUNT 744 a 952 c 841 g 789 t ORIGIN 1 ctgagcctcc cgtgccggcc ggccggccgg gggaacaggc gggcgctcgg ggggcgctcg 61 gggggcgggg ggagttccgg ttccggttct ttgtgcggct gcatcggcgg ctccgggaag 121 atggcggccc gggcgggttt ccagtctgtg gctccaagcg gcggcgccgg agcctcagga 181 ggggcgggcg cggctgctgc cttgggcccg ggcggaactc cggggcctcc tgtgcgaatg 241 ggcccggctc cgggtcaagg gctgtaccgc tccccgatgc ccggagcggc ctatccgaga 301 ccaggtatgt tgccaggcag ccgaatgaca cctcagggac cttccatggg accccctggc 361 tatgggggga acccttcagt ccgacctggc ctggcccagt cagggatgga tcagtcccgc 421 aagagacctg cccctcagca gatccagcag gtccagcagc aggcggtcca aaatcgaaac 481 cacaatgcaa agaaaaagaa gatggctgac aaaattctac ctcaaaggat tcgtgaactg 541 gtaccagaat cccaggccta tatggatctc ttggcttttg aaaggaaact ggaccagact 601 atcatgagga aacggctaga tatccaagag gccttgaaac gtcccatcaa gcaaaaacgg 661 aagctgcgaa ttttcatttc taacactttc aatccggcta agtcagatgc cgaggatggg 721 gaagggacgg tggcttcctg ggagcttcgg gtagaaggac ggctcctgga ggattcagcc 781 ttgtccaaat atgatgccac taaacaaaag aggaagttct cttccttttt taagtccttg 841 gtgattgaac tggacaaaga cctgtatggg ccagacaacc atctggtaga atggcacagg 901 accgccacta cccaggagac cgatggcttt caggtgaagc ggccgggaga cgtgaatgta 961 cggtgtactg tcctactgat gctggattac cagcctcccc agtttaaatt agacccccgc 1021 ctagctcgac tcctgggcat ccatacccag actcgtccag tgatcatcca agcactgtgg 1081 caatatatta agacacataa gctccaggac cctcacgagc gggagtttgt catctgtgac 1141 aagtacctgc agcagatctt tgagtctcaa cgtatgaagt tttcagagat ccctcagcgg 1201 ctccatgcct tgcttatgcc accagaacct atcatcatta atcatgtcat cagtgttgac 1261 ccgaatgatc agaaaaagac agcttgttat gacattgatg ttgaagtgga tgacaccttg 1321 aagacccaga tgaattcttt tctgctgtcc actgccagcc aacaggagat tgctactcta 1381 gacaacaaga tccatgagac aatagaaacc atcaaccagc tgaagactca gcgggagttc 1441 atgctgagct ttgccagaga ccctcagggt ttcatcaatg actggcttca gtcccagtgc 1501 agggacctca agacaatgac tgatgtggtg ggtaacccag aggaggagcg ccgagctgag 1561 ttctacttcc agccctgggc tcaggaggct gtgtgccgat acttctactc caaggtgcag 1621 cagagacgac aagaattaga gcaagccctg ggaatccgga atacataggg cctctcccac 1681 agccctgatt cgactgcacc aattcttgat ttgggccctg tgctgcctgc ctcatagtat 1741 ctgccttggt cttgcttggg gcgttccagg ggatgctgtt ggttcaagga caacaccaga 1801 atgaagaggg tctcacaaga cacctgttat cctcttcttt caccctatct cttcccaccc 1861 ccagcttccc tttgccccac aaagttccca tgtgcctgta ccctcccctg gtctacatag 1921 gacctctaga tagtgttaga gagagaacat gtagtggtaa tgagtgcttg gaatggattg 1981 ggcctcaggc caggtggtct tcaaggggac cagctaactg atcctgccct tcagagaccc 2041 aggagttggg agctttcgct ccttctccaa gactcaggcc tgtgggcact ctataagcta 2101 gttgatcttg gctctcctga taacagaatc caatttcctt ccttccctcc acaggtttgg 2161 aacaaactct cccttcactt gttgccctgt agcactacag aaaccctggt tcttgggctc 2221 cactgagccc caggtcagtc cccagccctc tgggttggcc tgctgtcagt gcttctctca 2281 ctccttagtt ggggtccaca tcagtattgg agttttgttc tttattgctc cctcccagac 2341 actccctgtg gctgcccttt gtgattccct cagatctgcc ctaatcccgg gcatttgggt 2401 gggggaatct tgcctttccc tttcagagcc ccagggatct catctgggga actgtcattg 2461 ccagcagagg ctgttccttc ctgctgtttg gagatgtgac tcattcattc actcactcca 2521 ccctgcctct gcatccctta atggagaaac gggcctaaaa ccaaacgggt aaaaagccct 2581 gggccatccc tgtcttcctg tcccttgtct gcccagttga cacctactgg tgacttctag 2641 ggcactgagg agtgaaagcg cctagggctg gagaatagcg ctgagttggg tttgtgactc 2701 ttccctctcc ctgcctcaca ggattgtgac tccccagccc ctgccctcaa agcttcagac 2761 ccctcaggta gcagcaggac cttgtgatct tggccccttg gatctgagat ggtttttgca 2821 tctttccagg agagcctcac attcttcttc caggttgtat cacccccgag ttagcatatc 2881 ccaggctcgc agactcaaca cagcaagggt gggagacagc tgggcacaaa gggggaattc 2941 cgttcagcat gggctctaaa cccacagaac tgacaaagcc cctgcttccc caccccctcc 3001 tcaggctcct gcgagcacac ccccaccccc aaatccctcc ctgttctaca ctggggacag 3061 cagaattttc tccccgtctt ccccttcctg ccattttccc tcccttgaaa ggttgacact 3121 ggacaacctt ggggcagctg agccctggcc gcctcctggc tggaaccatg agaaggaagc 3181 tcagtacttc ccacagtgtc cctgttgata actgttttta ttaactgaat tgtttttttc 3241 atggaccaaa cttttttttg tactgtcccc ttattgatgt tacccagttt taataaaaga 3301 atcttctgaa aaaaaaaaaa aaaaaa //