LOCUS BC009356 2131 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CDC42 effector protein (Rho GTPase binding) 1, mRNA
(cDNA clone MGC:15316 IMAGE:4300677), complete cds.
ACCESSION BC009356
VERSION BC009356.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2131)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2131)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009356.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: o Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34452716.
FEATURES Location/Qualifiers
source 1..2131
/db_xref="H-InvDB:HIT000034303"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15316 IMAGE:4300677"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2131
/gene="CDC42EP1"
/gene_synonym="BORG5"
/gene_synonym="CEP1"
/gene_synonym="MGC15316"
/gene_synonym="MSE55"
/db_xref="GeneID:11135"
/db_xref="HGNC:HGNC:17014"
/db_xref="MIM:606084"
CDS 374..1528
/gene="CDC42EP1"
/gene_synonym="BORG5"
/gene_synonym="CEP1"
/gene_synonym="MGC15316"
/gene_synonym="MSE55"
/codon_start=1
/product="CDC42 effector protein (Rho GTPase binding) 1"
/protein_id="AAH09356.1"
/db_xref="GeneID:11135"
/db_xref="HGNC:HGNC:17014"
/db_xref="MIM:606084"
/translation="MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGD
FRHTMHVGRGGDVFGDTSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASP
PAPSPAPPAISPIIKNAISLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGF
CTISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPE
APAAETPAPAANPPAPTANPTGPAANPPATTANPPAPAATPTGPAANPPAPAASSTPH
GHCPNGVTAGLGPVAEVKSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERV
EVLPQARASWESLDEEWRAPQAGSRTPVPSTVQANTFEFADAEEDDEVKV"
BASE COUNT 404 a 782 c 613 g 332 t
ORIGIN
1 cgactctccc gggctgccag ccgggacgcg cggccgccgc cgctgcagac gacgagtccg
61 ccctcgtccc gcgcccccgg ggctcgcgga gccaggtctc cacctctggg caggagagtt
121 gccgaccacc tcgggggtgc tttctctgcg cttgaacatc tatagctgct tctgaggggc
181 tgggagccgg gcccctggga gagacgagcc atgaaccccc cacagcctct gcatttgggg
241 acctcacctt aggagagtgc catttacagc ttccgccagg gcaaaggagc tgagcagcca
301 tcccaagccc agcccacctc cctcccccgg cccctggtag gcatggacta gcagctgtga
361 gcagccagag ctgatgcccg gcccccaggg gggcagaggc gccgccacca tgagcctggg
421 caagctctcg cctgtgggct gggtgtccag ttcacaggga aagaggcggc tgactgcaga
481 catgatcagc cacccactcg gggacttccg ccacaccatg catgtgggcc gtggcgggga
541 tgtcttcggg gacacgtcct tcctcagcaa ccacggtggc agctccggga gcacccatcg
601 ctcaccccgc agcttcctgg ccaagaagct gcagctggtg cggagggtgg gggcgccccc
661 ccggaggatg gcatctcccc ctgcaccctc cccggctcca ccggccatct cccccatcat
721 caagaacgcc atctccctgc cccagctcaa ccaggccgcc tacgacagcc tcgtggttgg
781 caagctcagc ttcgacagca gccccaccag ctccacggac ggccactcca gctacggcct
841 ggactctggg ttctgcacca tctcccgcct gccccgctcg gaaaagccgc atgaccgaga
901 ccgggatggt tccttcccct ctgagcccgg gcttcgccgc tctgactctc tcttgtcctt
961 ccgcctggac ctcgaccttg ggccctcact cctcagcgag ctgctagggg tcatgagcct
1021 gccagaagcc cctgcagctg agactccagc ccccgctgca aaccccccag cccctactgc
1081 aaaccccacg ggtcctgctg caaacccccc agccactact gcaaaccccc cagcacctgc
1141 cgcaaccccc acgggtcctg ctgcaaatcc cccagcccct gccgcaagct ccacacccca
1201 tggacactgt cccaatgggg taacagctgg gttgggccca gtggctgagg tgaagtccag
1261 cccagtggga gggggtcccc gaggacctgc tggccctgcc ctcggcaggc actggggagc
1321 aggctgggat ggcggccacc actacccaga gatggatgcg cggcaggagc gggtggaggt
1381 gctgccccaa gcccgggcct cctgggagag cctggacgaa gagtggaggg cgccccaggc
1441 aggcagcagg accccagtgc ccagcacagt gcaagcaaac acctttgaat ttgcggatgc
1501 tgaggaggat gatgaggtca aggtgtgagg ggctggggca cggtcccagg gccccaccta
1561 ggtgcagagc cggcccctca cctaacagct ggttcctacc agaccggaga ggggagaagt
1621 catgttgccc ctaaacccct ccccacctct gcaggacaga catgggaggg aggacaggga
1681 aggccaggct tgctctggga cttttatgct cccagaggcc ctgccaaact gaccacctcc
1741 cccgactgcc actctggacc taatagctgt tccttaggcc ccactccatg ccacccccac
1801 cagctggagg acccagcctc acagtgtgtc ctttgtgcca gaccaagcgg cccgtggggg
1861 gtggggggca gggagtgtac cacacagggc cattgtctca cctcccaaag ggaccgcctg
1921 cccccagctc atcccagagc gtccctgctg caaccctgac agccgtctcc caggccgctt
1981 ccccaacatc cccgccccag cctccctctt accccagaaa ggtcaggtat gacctcccgg
2041 ggaggaatcc cacctgcctg tataccccag acttgcctct ggggcctgat taaataaggc
2101 tgttttgata aaaaaaaaaa aaaaaaaaaa a
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