LOCUS BC009307 1902 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens PHD finger protein 15, mRNA (cDNA clone
IMAGE:4301096), partial cds.
ACCESSION BC009307
VERSION BC009307.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1902)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1902)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (12-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009307.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: o Column: 7.
FEATURES Location/Qualifiers
source 1..1902
/db_xref="H-InvDB:HIT000087249"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4301096"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1902
/gene="PHF15"
/gene_synonym="KIAA0239"
/db_xref="GeneID:23338"
CDS <1..1725
/gene="PHF15"
/gene_synonym="KIAA0239"
/codon_start=1
/product="PHF15 protein"
/protein_id="AAH09307.2"
/db_xref="GeneID:23338"
/translation="VFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKR
GGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECT
GTCIQCSMPSCVTAFHVTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGGPRNEPTSE
PTEPSQAGEDLEKVTLRKQRLQQLEEDFYELVEPAEVAERLDLAEALVDFIYQYWKLK
RKANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERT
KHAICKLQEQIFHLQMKLIEQDLCRGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEW
PLNNGHREDPAPGLLSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPP
PPPQDGPGSRTTPDKAPKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPI
LATPESPPPLAPETPDEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGAR
PDAGMGPPSAVAERPKVSLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEV
VRMGVLAS"
misc_feature 1..90
/gene="PHF15"
/gene_synonym="KIAA0239"
/note="PHD; Region: PHD-finger. PHD folds into an
interleaved type of Zn-finger chelating 2 Zn ions in a
similar manner to that of the RING and FYVE domains"
/db_xref="CDD:pfam00628"
BASE COUNT 430 a 588 c 556 g 328 t
ORIGIN
1 gtcttctgtg acaagtgcaa cgtctgtgtg catcaggcat gctacgggat cctcaaggtg
61 cccacgggca gctggctgtg ccggacgtgt gccctgggtg tccagccaaa gtgcctgctc
121 tgccccaagc gaggaggagc cttgaagccc actagaagtg ggaccaagtg ggtgcatgtc
181 agctgtgccc tatggattcc tgaggtcagc atcggctgcc cagagaagat ggagcccatc
241 accaagatct cgcatatccc agccagccgc tgggctctgt cctgcagcct ctgcaaggaa
301 tgcacaggca cctgcatcca gtgttccatg ccttcctgcg tcacagcgtt ccatgtcaca
361 tgcgcctttg accacggcct ggaaatgcgg actatattag cagacaacga tgaggtcaag
421 ttcaagtcat tctgccagga gcacagtgac gggggcccac gtaatgagcc cacatctgag
481 cccacggaac ccagccaggc tggcgaggac ctggaaaagg tgaccctgcg caagcagcgg
541 ctgcagcagc tagaggagga cttctacgag ctggtggagc cggctgaggt ggctgagcgg
601 ctggacctgg ctgaggcact ggtcgacttc atctaccagt actggaagct gaagaggaaa
661 gccaatgcca accagccgct gctgaccccc aagaccgacg aggtggacaa cctggcccag
721 caggagcagg acgtcctcta ccgccgcctg aagctcttca cccatctgcg gcaggaccta
781 gagagggtta gaaatctgtg ctacatggtg acaaggcgcg agagaacgaa acacgccatc
841 tgcaaactcc aggagcagat attccacctg cagatgaaac ttattgaaca ggatctgtgt
901 cgaggcctgt ccacctcatt ccccatcgat ggcaccttct tcaacagctg gctggcacag
961 tcggtgcaga tcacagcaga gaacatggcc atgagcgagt ggccactgaa caatgggcac
1021 cgcgaggacc ctgctccagg gctgctgtca gaggaactgc tgcaggacga ggagacactg
1081 ctcagcttca tgcgggaccc ctcgctgcga cctggtgacc ctgctaggaa ggcccgaggc
1141 cgcacccgcc tgcctgccaa gaagaaacca ccaccaccac caccgcagga cgggcctggt
1201 tcacggacga ctccagacaa agcccccaag aagacctggg gccaggatgc aggcagtggc
1261 aaggggggtc aagggccacc taccaggaag ccaccacgtc ggacatcttc tcacttgccg
1321 tccagccctg cagccgggga ctgtcccatc ctagccaccc ctgaaagccc cccgccactg
1381 gcccctgaga ccccggacga ggcagcctca gtagctgctg actcagatgt ccaagtgcct
1441 ggccctgcag caagccctaa gcctttgggc cggctccggc caccccgcga gagcaaggta
1501 acccggagat tgccgggtgc caggcctgat gctgggatgg gaccaccttc agctgtggct
1561 gagaggccca aggtcagcct gcattttgac actgagactg atggctactt ctctgatggg
1621 gagatgagcg actcagatgt agaggccgag gacggtgggg tgcagcgggg tccccgggag
1681 gcaggggcag aggaggtggt ccgcatgggc gtactggcct cctaactcac ccccttccct
1741 gtcccaggcc ctgccctggt ccccccacaa ggcctcagcc cagtcacaac tgccatttcc
1801 agtctctgct gagtgtccca gaccctcgag gctgccactc cgtcgtggtt ttatttttaa
1861 tatagagaga gttttgaatt ctaaaaaaaa aaaaaaaaaa aa
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