LOCUS BC009260 1523 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens major histocompatibility complex, class I, F, mRNA
(cDNA clone IMAGE:4039990), partial cds.
ACCESSION BC009260
VERSION BC009260.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1523)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1523)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC009260.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 25 Row: n Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9665231.
FEATURES Location/Qualifiers
source 1..1523
/db_xref="H-InvDB:HIT000034238_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4039990"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1523
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/db_xref="GeneID:3134"
/db_xref="MIM:143110"
CDS <1..1385
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/codon_start=3
/product="HLA-F protein"
/protein_id="AAH09260.2"
/db_xref="GeneID:3134"
/db_xref="MIM:143110"
/translation="SPTHPAGLIFFPDAEVGVMAPRSLLLLLSGALALTDTWAGSHSL
RYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWT
TGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGK
DYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETL
QRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAG
DGTFQKWAAVVVPSGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLG
AVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGLLMITWWSSLFLLGVLFQGYLG
CLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGFGFRRGRSFLLRSWHHL
MKRVQIKIFD"
misc_feature 120..656
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/note="MHC_I; Region: Class I Histocompatibility antigen,
domains alpha 1 and 2"
/db_xref="CDD:pfam00129"
misc_feature 669..944
/gene="HLA-F"
/gene_synonym="HLA-5.4"
/gene_synonym="HLA-CDA12"
/gene_synonym="HLAF"
/note="IGc; Region: Immunoglobulin domain constant region
subfamily"
/db_xref="CDD:cd00098"
BASE COUNT 343 a 425 c 448 g 307 t
ORIGIN
1 aaagtcccac gcaccccgcg ggactcatat ttttcccaga cgcggaggtt ggggtcatgg
61 cgccccgaag cctcctcctg ctgctctcag gggccctggc cctgaccgat acttgggcag
121 gctcccactc cttgaggtat ttcagcaccg ctgtgtcgcg gcccggccgc ggggagcccc
181 gctacatcgc cgtggagtac gtagacgaca cgcaattcct gcggttcgac agcgacgccg
241 cgattccgag gatggagccg cgggagccgt gggtggagca agaggggccg cagtattggg
301 agtggaccac agggtacgcc aaggccaacg cacagactga ccgagtggcc ctgaggaacc
361 tgctccgccg ctacaaccag agcgaggctg ggtctcacac cctccaggga atgaatggct
421 gcgacatggg gcccgacgga cgcctcctcc gcgggtatca ccagcacgcg tacgacggca
481 aggattacat ctccctgaac gaggacctgc gctcctggac cgcggcggac accgtggctc
541 agatcaccca gcgcttctat gaggcagagg aatatgcaga ggagttcagg acctacctgg
601 agggcgagtg cctggagttg ctccgcagat acttggagaa tgggaaggag acgctacagc
661 gcgcagatcc tccaaaggca cacgttgccc accaccccat ctctgaccat gaggccaccc
721 tgaggtgctg ggccctgggc ttctaccctg cggagatcac gctgacctgg cagcgggatg
781 gggaggaaca gacccaggac acagagcttg tggagaccag gcctgcaggg gatggaacct
841 tccagaagtg ggccgctgtg gtggtgcctt ctggagagga acagagatac acatgccatg
901 tgcagcacga ggggctgccc cagcccctca tcctgagatg ggagcagtct ccccagccca
961 ccatccccat cgtgggcatc gttgctggcc ttgttgtcct tggagctgtg gtcactggag
1021 ctgtggtcgc tgctgtgatg tggaggaaga agagctcaga tagaaacaga gggagctact
1081 ctcaggctgc agcctactca gtggtcagcg gactcttgat gataacatgg tggtcaagct
1141 tatttctcct gggggtgctc ttccaaggat atttgggctg cctccggagt cacagtgtct
1201 tgggccgccg gaaggtgggt gacatgtgga tcttgttttt tttgtggctg tggacatctt
1261 tcaacactgc cttcttggcc ttgcaaagcc ttcgctttgg cttcggcttt aggaggggca
1321 ggagcttcct tcttcgttct tggcaccatc ttatgaaaag ggtccagatt aagatttttg
1381 actgagtcat tctaaagtaa gttgcaagac ccatgatact agaccactaa atacttcatc
1441 acacacctcc taagaataag aaccaacatt atcacaccaa agaaaataaa taattccata
1501 atattaaaaa aaaaaaaaaa aaa
//