LOCUS BC009239 2884 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat and sterile alpha motif containing
1, mRNA (cDNA clone MGC:2867 IMAGE:2988664), complete cds.
ACCESSION BC009239
VERSION BC009239.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2884)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2884)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC009239.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 3 Row: f Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53729362.
FEATURES Location/Qualifiers
source 1..2884
/db_xref="H-InvDB:HIT000034220"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2867 IMAGE:2988664"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2884
/gene="LRSAM1"
/gene_synonym="FLJ31641"
/gene_synonym="RIFLE"
/gene_synonym="TAL"
/db_xref="GeneID:90678"
/db_xref="HGNC:HGNC:25135"
CDS 78..2249
/gene="LRSAM1"
/gene_synonym="FLJ31641"
/gene_synonym="RIFLE"
/gene_synonym="TAL"
/codon_start=1
/product="leucine rich repeat and sterile alpha motif
containing 1"
/protein_id="AAH09239.1"
/db_xref="GeneID:90678"
/db_xref="HGNC:HGNC:25135"
/translation="MPLFFRKRKPSEEARKRLEYQMCLAKEAGADDILDISKCELSEI
PFGAFATCKVLQKKVLIVHTNHLTSLLPKSCSLLSLATIKVLDLHDNQLTALPDDLGQ
LTALQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGN
EIQRLPQMLAHVRTLEMLSLDASAMVYPPREVCGAGTAAILQFLCKESGLEYYPPSQY
LLPILEQDGIENSRDSPDGPTDRFSREELEWQNRFSDYEKRKEQKMLEKLEFERRLEL
GQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLDAERQRLQEQLKQTEQN
ISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEETESLRRRDVASAMQQM
LTESCKNRLIQMAYESQRQNLVQQACSSMAEMDERFQQILSWQQMDQNKAISQILQES
AMQKAAFEALQVKKDLMHRQIRSQIKLIETELLQLTQLELKRKSLDTESLQEMISEQR
WALSSLLQQLLKEKQQREEELREILTELEAKSETRQENYWLIQYQRLLNQKPLSLKLQ
EEGMERQLVALLEELSAEHYLPIFAHHRLSLDLLSQMSPGDLAKVGVSEAGLQHEILR
RVQELLDAARIQPELKPPMGEVVTPTAPQEPPESVRPSAPPAELEVQASECVVCLERE
AQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQRLRIYHSS"
BASE COUNT 706 a 829 c 837 g 512 t
ORIGIN
1 atcaggaagg gggtgcaaga gggttagtga ttggggagca gaaggggtcc taaagatcgc
61 tctgggaaaa gggaaggatg ccgctcttct tccggaagcg gaaacccagt gaggaggctc
121 ggaaacgcct ggagtaccag atgtgtttgg caaaagaagc tggggcagat gacattctcg
181 acatctctaa atgtgagctc tcagagattc catttggagc ttttgcaaca tgcaaagttc
241 tgcagaagaa ggtgctgatc gtccacacga atcacctcac ttccctgctt cccaaatcct
301 gcagcctcct gagtctggca accattaagg ttctagatct ccacgataat cagctgacag
361 cccttcctga cgatctgggg cagctgactg ccctccaggt cttaaacgtg gaaaggaatc
421 aactgatgca gctcccacgt tccattggga acctgaccca gctccagact ctcaatgtta
481 aagacaacaa gctgaaggag cttccagaca ccgtggggga gcttcgaagc ctgcgtaccc
541 tcaacatcag tggaaacgag atccagagat tgccgcagat gctggctcac gttcgaaccc
601 tggagatgct gagccttgac gcctcggcca tggtctaccc gccgcgggag gtgtgtggtg
661 ccggcactgc ggccatcttg cagttcctct gcaaagagtc agggctggaa tactaccccc
721 cttctcagta cttgctgcca attctggagc aagatggaat cgagaactct cgggacagcc
781 ctgatgggcc cacggacaga ttctcaaggg aggagttaga gtggcagaac aggttctcag
841 actatgagaa gaggaaggaa cagaagatgc tggagaaact cgagtttgaa cggcgcctgg
901 aactggggca gcgggagcac acccagctcc ttcagcagag cagcagccag aaggatgaga
961 tccttcagac ggtcaaggag gagcagtccc ggctggagca gggcctgagt gagcaccagc
1021 gccacctcga cgcagagcgg cagcggctgc aggagcagct gaagcagacg gaacagaaca
1081 tttccagccg gatccagaag ctgctgcagg acaatcagag acaaaagaaa agctccgaga
1141 ttttgaaatc gctggaaaat gaaagaataa gaatggaaca gttgatgtcc ataacccagg
1201 aggagactga gagcctgcgg cgacgtgacg ttgcctccgc catgcagcag atgctgactg
1261 agagctgtaa gaaccggctc atccagatgg cctacgaatc tcagaggcag aacttggtcc
1321 agcaggcctg ttccagcatg gccgaaatgg atgaacgatt ccagcagatt ctgtcgtggc
1381 agcaaatgga tcagaacaaa gccatcagcc agatcctgca ggagagcgcg atgcagaagg
1441 ctgcgttcga ggcactccag gtgaagaaag acctgatgca tcggcagatc aggagccaga
1501 ttaagttaat agaaactgag ttattgcagc tgacacagct ggagttaaag aggaagtccc
1561 tggacacaga gtcactccag gagatgatct cggagcagcg ctgggccctc agctccctgc
1621 tccagcagct gctcaaagag aagcagcagc gagaggaaga gctccgggaa atcctgacgg
1681 agttagaagc caaaagtgaa accaggcagg aaaattactg gctgattcag tatcaacggc
1741 ttttgaacca gaagcccttg tccttgaagc tgcaagaaga ggggatggag cgccagctgg
1801 tggccctcct ggaggagctg tcggctgagc actacctgcc catctttgcg caccaccgcc
1861 tctcactgga cctgctgagc caaatgagcc caggggacct ggccaaggtg ggcgtctcag
1921 aagctggcct gcagcacgag atcctccgga gagtccagga actgctggat gcagccagga
1981 tccagccaga gctgaaacca ccaatgggtg aggtcgtcac ccctacggcc ccccaggagc
2041 ctcctgagtc tgtgaggcca tccgctcccc ctgcagagct ggaggtgcag gcctcagagt
2101 gtgtcgtgtg cctggaacgg gaggcccaga tgatcttcct caactgtggc cacgtctgct
2161 gctgccagca gtgctgccag ccactgcgca cctgcccgct gtgccgccag gacatcgccc
2221 agcgcctccg catctaccac agcagctgag tgctgcccgc ccacctgggc ctggtcctag
2281 ccctgcctcg gccactgtga gccccgggct cctgctcagc cttgtgccag ccagactcgt
2341 atgaggctcc cccctgccct gggccccttc cccactgccc aggagccccc atcctaagct
2401 ccaagcatgt ctgggccagg cagaggtgct cctcatccat gacaccacca gtctgaatgg
2461 tcctgggggc tggggctgga gaggccgctg caccaccacc cgagcctggg agccagcgtc
2521 ccagcctaat cacggatctg ctgcctccca gctgtcttga ctgaaggcca ccgcccctgc
2581 aggagcttgg gtcctcatct gggggccatg cacaggcccg tcccaccctg catgtgggaa
2641 gggagcagga gggcctggct gggtgagggg aggccttcct gggaaggcgt gtggtgcagg
2701 cctgtgctca cagtggcacc agcaaccctg ggtctccctc tctgctgctc cccagaaccc
2761 cggggccctc ctgctctcca caactgtccc tccttacccc atgtagctcg atccgaagca
2821 ggagtgtcaa taaacctgtc ttcagtgcga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaa
//