LOCUS BC009234 1185 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 5, mRNA (cDNA clone MGC:16550 IMAGE:4054398), complete cds. ACCESSION BC009234 VERSION BC009234.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1185) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1185) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC009234.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 25 Row: o Column: 17. FEATURES Location/Qualifiers source 1..1185 /db_xref="H-InvDB:HIT000034216" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:16550 IMAGE:4054398" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1185 /gene="HLA-DRB5" /db_xref="GeneID:3127" /db_xref="HGNC:HGNC:4953" /db_xref="MIM:604776" CDS 44..844 /gene="HLA-DRB5" /codon_start=1 /product="major histocompatibility complex, class II, DR beta 5" /protein_id="AAH09234.1" /db_xref="GeneID:3127" /db_xref="HGNC:HGNC:4953" /db_xref="MIM:604776" /translation="MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYEC HFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRA AVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRW FRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR AQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS" BASE COUNT 272 a 319 c 327 g 267 t ORIGIN 1 cttgcctgct cctctggccc ctggtcctgt cctgttctcc agcatggtgt gtctgaagct 61 ccctggaggt tcctacatgg caaagctgac agtgacactg atggtgctga gctccccact 121 ggctttggct ggggacaccc gaccacgttt cttgcagcag gataagtatg agtgtcattt 181 cttcaacggg acggagcggg tgcggttcct gcacagagac atctataacc aagaggagga 241 cttgcgcttc gacagcgacg tgggggagta ccgggcggtg acggagctgg ggcggcctga 301 cgctgagtac tggaacagcc agaaggactt cctggaagac aggcgcgccg cggtggacac 361 ctactgcaga cacaactacg gggttggtga gagcttcaca gtgcagcggc gagttgagcc 421 taaggtgact gtgtatcctg caaggaccca gaccctgcag caccacaacc tcctggtctg 481 ctctgtgaat ggtttctatc caggcagcat tgaagtcagg tggttccgga acagccagga 541 agagaaggct ggggtggtgt ccacaggcct gattcagaat ggagactgga ccttccagac 601 cctggtgatg ctggaaacag ttcctcgaag tggagaggtt tacacctgcc aagtggagca 661 cccaagcgtg acgagccctc tcacagtgga atggagagca cagtctgaat ctgcacagag 721 caagatgctg agtggagtcg ggggctttgt gctgggcctg ctcttccttg gggccgggct 781 attcatctac ttcaagaatc agaaagggca ctctggactt cacccaacag gactcgtgag 841 ctgaagtgca gatgaccaca ttcaaggggg aaccttctgc cccagctttg catgatgaaa 901 agctttcctg cttggctctt attcttccac aagagaggac tttctcaggc cctggttgct 961 accggttcag caactctgca gaaaatgtcc atccttgtgg cttcctcagc tcctgccctt 1021 ggcctgaagt cccagcattg atggcagtgc ctcatcttca actttagtgc tcccctttac 1081 ctaaccctac ggcctcccat gcatctgtac tccccctgtg tgccacaaat gcactacgtt 1141 attaaatttt tctgaagccc agaaaaaaaa aaaaaaaaaa aaaaa //