LOCUS BC009113 2765 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens sema domain, immunoglobulin domain (Ig), short basic
domain, secreted, (semaphorin) 3B, mRNA (cDNA clone MGC:18122
IMAGE:4153377), complete cds.
ACCESSION BC009113
VERSION BC009113.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2765)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2765)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: d Column: 8.
FEATURES Location/Qualifiers
source 1..2765
/db_xref="H-InvDB:HIT000034175"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18122 IMAGE:4153377"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2765
/gene="SEMA3B"
/gene_synonym="LUCA-1"
/gene_synonym="SemA"
/gene_synonym="SEMA5"
/gene_synonym="semaV"
/db_xref="GeneID:7869"
/db_xref="MIM:601281"
CDS 339..2246
/gene="SEMA3B"
/gene_synonym="LUCA-1"
/gene_synonym="SemA"
/gene_synonym="SEMA5"
/gene_synonym="semaV"
/codon_start=1
/product="SEMA3B protein"
/protein_id="AAH09113.1"
/db_xref="GeneID:7869"
/db_xref="MIM:601281"
/translation="MNFVKLLHAYNRTHLLACGTGAFHPTCAFVEVGHRAEEPVLRLD
PGRIEDGKGKSPYDPRHRAASVLVGEELYSGVAADLMGRDFTIFRSLGQRPSLRTEPH
DSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAAPALGRLSVSRVGQICRNDV
GGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQDVFLLSSRDHRTPLLYAVFSTSS
IFQGSAVCVYSMNDVRRAFLGPFAHKEGPMHQWVSYQGRVPYPRPGMCPSKTFGTFSS
TKDFPDDVIQFARNHPLMYNSVLPTGGRPLFLQVGANYTFTQIAADRVAAADGHYDVL
FIGTDVGTVLKVISVPKGSRPSAEGLLLEELHVFEDSAAVTSMQISSKRHQLYVASRS
AVAQIALHRCAAHGRVCTECCLARDPYCAWDGVACTRFQPSAKRRFRRQDVRNGDPST
LCSGDSSRPALLEHKVFGVEGSSAFLECEPRSLQARVEWTFQRAGVTAHTQVLAEERT
ERTARGLLLRRLRRRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQAERLARAEEAAPA
APPGPKLWYRDFLQLVEPGGGGSANSLRMCRPQPALQSLPLESRRKGRNRRTHAPEPR
AERGPRSATHW"
BASE COUNT 561 a 828 c 911 g 465 t
ORIGIN
1 gctaaaacag aggcctgcct gttctggctg ggatgagggc agggaggtcg aggtggctga
61 ggtctggggg tggtgagtca gggtgggggc tcgtgtaatt cttctggggt gcctctgagt
121 catgggaggc tttgcaggcc tgtgcttccc cagacaccca ccctcgtgag gcctgggctg
181 gtcagcaagg gcccccaggt ccctgtagcc catgttagta cttgcctggg ctgatgccga
241 agagagggag gggtgaggat gccactggtg agctgggacc tcttaaggct acgtccctgg
301 gggaagcctc acacctccaa ccctactaga ctgagtgcat gaacttcgtg aagttgctgc
361 atgcctacaa ccgcacccat ttgctggcct gtggcacggg agccttccac ccaacctgtg
421 cctttgtgga agtgggccac cgggcagagg agcccgtcct ccggctggac ccaggaagga
481 tagaggatgg caaggggaag agtccttatg accccaggca tcgggctgcc tccgtgctgg
541 tgggggagga gctatactca ggggtggcag cagacctcat gggacgagac tttaccatct
601 ttcgcagcct agggcaacgt ccaagtctcc gaacagagcc acacgactcc cgctggctca
661 atgagcccaa gtttgtcaag gtattttgga tcccggagag cgagaaccca gacgacgaca
721 aaatctactt cttctttcgt gagacggcgg tagaggcggc gccggcactg ggacgcctgt
781 ccgtgtcccg cgttggccag atctgccgga acgacgtggg cggccagcgc agcctggtca
841 acaagtggac gacgttcctg aaggcgcggc tggtgtgctc ggtgcccggc gtcgagggcg
901 acacccactt cgatcagctc caggatgtgt ttctgttgtc ctcgcgggac caccggaccc
961 cgctgctcta tgccgtcttc tccacgtcca gcatcttcca gggctctgcg gtgtgcgtgt
1021 acagcatgaa cgacgtgcgc cgggccttct tgggaccctt tgcacacaag gaggggccca
1081 tgcaccagtg ggtgtcatac cagggtcgcg tcccctaccc gcggccaggc atgtgcccca
1141 gcaagacctt tggcaccttc agttccacca aggacttccc agacgatgtc atccagtttg
1201 cgcggaacca ccccctcatg tacaactctg tcctgcccac tggggggcgc cctcttttcc
1261 tacaagttgg agccaattac accttcactc aaattgccgc ggaccgggtt gcagccgctg
1321 acggacacta tgacgtcctc ttcattggca cagacgttgg cacggtgctg aaggtgatct
1381 cggtccccaa gggcagtagg cccagcgcag aggggctgct cctggaggag ctgcacgtgt
1441 ttgaggactc ggccgctgtc accagcatgc aaatttcttc caagaggcac cagctgtacg
1501 tagcctcgcg gagcgcggtg gcccagatcg cgttgcaccg ctgcgctgcc cacggccgcg
1561 tctgcaccga atgctgtctg gcgcgtgacc cctactgcgc ctgggacggg gtcgcgtgca
1621 cgcgcttcca gcccagtgcc aagaggcggt tccggcggca agacgtaagg aatggcgacc
1681 ccagcacgtt gtgctccgga gactcgtctc gtcccgcgct gctggaacac aaggtgttcg
1741 gcgtggaggg cagcagcgcc tttctggagt gtgagccccg ctcgctgcag gcgcgcgtgg
1801 agtggacttt ccagcgcgca ggggtgacag cccacaccca ggtgctggca gaggagcgca
1861 ccgagcgcac cgcccgggga ctactgctgc gcaggctgcg gcgccgggac tcgggcgtgt
1921 acttgtgcgc cgccgtcgag cagggcttta cgcaaccgct gcgtcgcctg tcgctgcacg
1981 tgttgagtgc tacgcaggcc gaacgactgg cgcgggccga ggaggctgcg cccgccgcgc
2041 cgccgggccc caaactctgg taccgggact ttctgcagct ggtggagccg ggcggaggtg
2101 gcagcgcgaa ctccctgcgc atgtgccgcc cgcagcctgc gctgcagtca ctgcccctgg
2161 agtcgcggag aaagggccgt aaccggagga cccacgcccc tgagcctcgc gctgagcggg
2221 ggccgcgcag cgcaacgcac tggtgaccag actgtcccca cgccgggaac caagcaggag
2281 acgacaggcg agagaggagc cagacagacc ctgaaaagaa ggacgggttg gggccgggca
2341 cattgggggt caccggccga tggagacacc aaccgacagg ccctggctga gggcagctgc
2401 gcgggcttat ttattaacag gataaccctt gaatgtagca gccccgggag ggcggcacag
2461 gtcgggcgca ggattcagcc ggagggaagg gacggggaag ccgagctcca gagcaacgac
2521 cagggccgag gaggtgcctg gagtgcccac cctgggagac agaccccacc tccttgggta
2581 gtgagcagtg agcagaaagc tgtgaacagg ctgggctgct ggaggtgggg cgaggcaggc
2641 cgactgtact aaagtaacgc aataaacgca ttatcagcca aagctggaat ggccccagca
2701 gaaaacccca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2761 aaaaa
//