LOCUS BC008988 1306 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens T-cell immunoglobulin and mucin domain containing 4,
mRNA (cDNA clone MGC:17333 IMAGE:4184237), complete cds.
ACCESSION BC008988
VERSION BC008988.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1306)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1306)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: l Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923904.
FEATURES Location/Qualifiers
source 1..1306
/db_xref="H-InvDB:HIT000034128"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17333 IMAGE:4184237"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1306
/gene="TIMD4"
/db_xref="GeneID:91937"
/db_xref="HGNC:HGNC:25132"
/db_xref="MIM:610096"
CDS 58..1194
/gene="TIMD4"
/codon_start=1
/product="T-cell immunoglobulin and mucin domain
containing 4"
/protein_id="AAH08988.1"
/db_xref="GeneID:91937"
/db_xref="HGNC:HGNC:25132"
/db_xref="MIM:610096"
/translation="MSKEPLILWLMIEFWWLYLTPVTSETVVTEVLGHRVTLPCLYSS
WSHNSNSMCWGKDQCPYSGCKEALIRTDGMRVTSRKSAKYRLQGTIPRGDVSLTILNP
SESDSGVYCCRIEVPGWFNDVKINVRLNLQRASTTTHRTATTTTRRTTTTSPTTTRQM
TTTPAALPTTVVTTPDLTTGTPLQMTTIAVFTTANTCLSLTPSTLPEEATGLLTPEPS
KEGPILTAESETVLPSDSWSSAESTSADTVLLTSKESKVWDLPSTSHVSMWKTSDSVS
SPQPGASDTAVPEQNKTTKTGQMDGIPMSMKNEMPISQLLMIIAPSLGFVLFALFVAF
LLRGKLMETYCSQKHTRLDYIGDSKNVLNDVQHGREDEDGLFTL"
BASE COUNT 384 a 350 c 287 g 285 t
ORIGIN
1 ataagaggtt gggctttgga tagatagaca gactcctggg tccggtcaac cgtcaaaatg
61 tccaaagaac ctctcattct ctggctgatg attgagtttt ggtggcttta cctgacacca
121 gtcacttcag agactgttgt gacggaggtt ttgggtcacc gggtgacttt gccctgtctg
181 tactcatcct ggtctcacaa cagcaacagc atgtgctggg ggaaagacca gtgcccctac
241 tccggttgca aggaggcgct catccgcact gatggaatga gggtgacctc aagaaagtca
301 gcaaaatata gacttcaggg gactatcccg agaggtgatg tctccttgac catcttaaac
361 cccagtgaaa gtgacagcgg tgtgtactgc tgccgcatag aagtgcctgg ctggttcaac
421 gatgtaaaga taaacgtgcg cctgaatcta cagagagcct caacaaccac gcacagaaca
481 gcaaccacca ccacacgcag aacaacaaca acaagcccca ccaccacccg acaaatgaca
541 acaaccccag ctgcacttcc aacaacagtc gtgaccacac ccgatctcac aaccggaaca
601 ccactccaga tgacaaccat tgccgtcttc acaacagcaa acacgtgcct ttcactaacc
661 ccaagcaccc ttccggagga agccacaggt cttctgactc ccgagccttc taaggaaggg
721 cccatcctca ctgcagaatc agaaactgtc ctccccagtg attcctggag tagtgctgag
781 tctacttctg ctgacactgt cctgctgaca tccaaagagt ccaaagtttg ggatctccca
841 tcaacatccc acgtgtcaat gtggaaaacg agtgattctg tgtcttctcc tcagcctgga
901 gcatctgata cagcagttcc tgagcagaac aaaacaacaa aaacaggaca gatggatgga
961 atacccatgt caatgaagaa tgaaatgccc atctcccaac tactgatgat catcgccccc
1021 tccttgggat ttgtgctctt cgcattgttt gtggcgtttc tcctgagagg gaaactcatg
1081 gaaacctatt gttcgcagaa acacacaagg ctagactaca ttggagatag taaaaatgtc
1141 ctcaatgacg tgcagcatgg aagggaagac gaagacggcc tttttaccct ctaacaacgc
1201 agtagcatgt tagattgagg atgggggcat gacactccag tgtcaaaata agtcttagta
1261 gatttccttg tttcataaaa aagactcact taaaaaaaaa aaaaaa
//