LOCUS       BC008987                1156 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens major histocompatibility complex, class II, DR beta 3,
            mRNA (cDNA clone MGC:17049 IMAGE:4184806), complete cds.
ACCESSION   BC008987
VERSION     BC008987.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1156)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: David N. Louis, M.D.
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 12 Row: l Column: 1
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 18641371.
FEATURES             Location/Qualifiers
     source          1..1156
                     /db_xref="H-InvDB:HIT000034127"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:17049 IMAGE:4184806"
                     /tissue_type="Brain, glioblastoma with EGFR amplification"
                     /clone_lib="NCI_CGAP_Brn64"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1156
                     /gene="HLA-DRB3"
                     /db_xref="GeneID:3125"
                     /db_xref="HGNC:HGNC:4951"
     CDS             25..825
                     /gene="HLA-DRB3"
                     /codon_start=1
                     /product="major histocompatibility complex, class II, DR
                     beta 3"
                     /protein_id="AAH08987.1"
                     /db_xref="GeneID:3125"
                     /db_xref="HGNC:HGNC:4951"
                     /translation="MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSEC
                     HFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRG
                     RVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW
                     FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWR
                     ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS"
BASE COUNT          257 a          304 c          329 g          266 t
ORIGIN      
        1 cctggtcctg tcctcttctc cagcatggtg tgtctgaagc tccctggagg ctccagcttg
       61 gcagcgttga cagtgacact gatggtgctg agctcccgac tggctttcgc tggggacacc
      121 cgaccacgtt tcttggagct gcgtaagtct gagtgtcatt tcttcaatgg gacggagcgg
      181 gtgcggtacc tggacagata cttccataac caggaggagt tcctgcgctt cgacagcgac
      241 gtgggggagt accgggcggt gacggagctg gggcggcctg tcgccgagtc ctggaacagc
      301 cagaaggacc tcctggagca gaagcggggc cgggtggaca attactgcag acacaactac
      361 ggggttggtg agagcttcac agtgcagcgg cgagtccatc ctcaggtgac tgtgtatcct
      421 gcaaagaccc agcccctgca gcaccacaac ctcctggtct gctctgtgag tggtttctat
      481 ccaggcagca ttgaagtcag gtggttccgg aacggccagg aagagaaggc tggggtggtg
      541 tccacgggcc tgatccagaa tggagactgg accttccaga ccctggtgat gctagaaaca
      601 gttcctcgga gtggagaggt ttacacttgc caagtggagc acccaagcgt aacgagcgct
      661 ctcacagtgg aatggagagc acggtctgaa tctgcacaga gcaagatgct gagtggagtc
      721 gggggctttg tgctgggcct gctcttcctt ggggccgggc tgttcatcta cttcaggaat
      781 cagaaaggac actctggact tcagccaaca ggattcctga gctgaagtgc agatgacaat
      841 ttaaggaaga atcttctgcc ccagctttgc aggatgaaaa gctttcccgc ctggctgtta
      901 ttcttccacg agagagggct ttctcaggac ctagttgcta ctggttcagc aactgcagaa
      961 aatgtcctcc cttgtggctt cctcagttcc tgcccttggc ctgaagtccc agcattgatg
     1021 gcagcgcctc atcttcaact tttgtgctcc cctttgccta aaccctatgg cctcctgtgc
     1081 atctgtactc accctgtacc acaaacacat tacattatta aatgtttctc aaagatggaa
     1141 aaaaaaaaaa aaaaaa
//