LOCUS BC008986 1258 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens rhabdoid tumor deletion region gene 1, mRNA (cDNA clone MGC:16968 IMAGE:4339021), complete cds. ACCESSION BC008986 VERSION BC008986.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1258) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1258) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 12 Row: o Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22209005. FEATURES Location/Qualifiers source 1..1258 /db_xref="H-InvDB:HIT000034126" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:16968 IMAGE:4339021" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1258 /gene="RTDR1" /gene_synonym="MGC16968" /db_xref="GeneID:27156" /db_xref="HGNC:HGNC:13437" /db_xref="MIM:605663" CDS 127..1173 /gene="RTDR1" /gene_synonym="MGC16968" /codon_start=1 /product="rhabdoid tumor deletion region gene 1" /protein_id="AAH08986.1" /db_xref="GeneID:27156" /db_xref="HGNC:HGNC:13437" /db_xref="MIM:605663" /translation="MAHSQNSLELPININATQITTAYGHRALPKLKEELQSEDLQTRQ KALMALCDLMHDPECIYKAMNIGCMENLKALLKDSNSMVRIKTTEVLHITASHSVGRY AFLEHDIVLALSFLLNDPSPVCRGNLYKAYMQLVQVPRGAQEIISKGLISSLVWKLQV EVEEEEFQEFILDTLVLCLQEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVS ISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITEGKYAALEAQAIGL LLELLHSPMTIARLNATKALTMLAEAPEGRKALQTHVPTFRAMEVETYEKPQVAEALQ RAARIAISVIEFKP" BASE COUNT 322 a 349 c 347 g 240 t ORIGIN 1 acgatgtcgc ctggcaactg aataggttgg ccagtggcgc gggctactgg aagcagaaag 61 ggctgcggag gcagtgagtg gtttctgcag agcttcattt ggaaaggcct ctgtagttgg 121 ggaaagatgg cccattccca gaactccttg gagcttccca ttaacatcaa tgccacccag 181 attaccactg cctatggcca tcgggccctg cccaagctga aggaggagct gcagtcagag 241 gacctccaga cgaggcagaa agccctcatg gccctgtgtg acctcatgca tgaccccgag 301 tgtatctaca aggccatgaa cataggctgt atggagaacc tgaaagcttt gctgaaggat 361 agcaacagta tggtgcgcat aaagaccacc gaggtgctcc acatcacggc aagccatagc 421 gtgggcagat acgcctttct agagcacgac atcgtccttg ccctgtcctt cctgctgaat 481 gaccccagcc cagtctgccg ggggaacctg tacaaggcat acatgcagct ggtccaggtg 541 cctagagggg cccaagagat catcagcaaa ggtctgattt cctcactggt atggaagctg 601 caggtggagg tggaggagga ggagttccag gagttcatcc tggacacact ggtcctctgc 661 ctgcaggagg atgccaccga ggccctgggc agcaatgtgg tgcttgtcct gaagcagaag 721 ctcctcagcg ccaaccagaa catccgcagc aaggccgccc gtgcgctcct taatgtcagc 781 atatctcgag agggcaagaa acaggtgtgt cattttgacg tcatccccat cctggtccat 841 ctgctgaaag acccagtgga gcatgtgaag tctaacgctg ccggtgccct gatgttcgcc 901 acagtgatca ctgaagggaa gtatgcggcc ctggaggcac aagccatcgg cctgctcctg 961 gagctgctgc actcccccat gaccatagcg cgcctgaatg ccaccaaggc ccttaccatg 1021 ctggcagagg cccccgaggg ccgcaaggcc ctgcagacgc acgtgcccac tttccgtgcc 1081 atggaggtgg agacttacga aaagcctcaa gtggccgaag ccttacagcg ggcagcccgg 1141 atcgccatca gtgtcatcga gttcaaaccc tgagcccttc attcacctct gtgagtgaat 1201 aaatgtgcta agtctcttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa //