LOCUS BC008960 2204 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pipecolic acid oxidase, mRNA (cDNA clone MGC:4070
IMAGE:2961289), complete cds.
ACCESSION BC008960
VERSION BC008960.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2204)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2204)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008960.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: p Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 60499000.
FEATURES Location/Qualifiers
source 1..2204
/db_xref="H-InvDB:HIT000034109"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4070 IMAGE:2961289"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2204
/gene="PIPOX"
/gene_synonym="LPIPOX"
/db_xref="GeneID:51268"
/db_xref="HGNC:HGNC:17804"
CDS 327..1499
/gene="PIPOX"
/gene_synonym="LPIPOX"
/codon_start=1
/product="pipecolic acid oxidase"
/protein_id="AAH08960.1"
/db_xref="GeneID:51268"
/db_xref="HGNC:HGNC:17804"
/translation="MAAQKDLWDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHS
RGSSHGQSRIIRKAYLEDFYTRMMHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQE
LKTIQANLSRQRVEHQCLSSEELKQRFPNIRLPRGEVGLLDNSGGVIYAYKALRALQD
AIRQLGGIVRDGEKVVEINPGLLVTVKTTSRSYQAKSLVITAGPWTNQLLRPLGIEMP
LQTLRINVCYWREMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGN
HADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILDRH
PKYDNIVIGAGFSGHGFKLAPVVGKILYELSMKLTPSYDLAPFRISRFPSLGKAHL"
BASE COUNT 559 a 571 c 601 g 473 t
ORIGIN
1 gagacaggaa ggtggcaaag gaaggagccc atttgcatga caataattga gccaagaata
61 gaaagccaca gggatgcaag ggtgaggctg gcggctgagc tgggctaaac ctcacaaatc
121 agactaccca gctctgctcc gcaggggaag ggagactgag ccctgggcca ggcttggcag
181 agagggaagc gggaggacac gaccccaggg cattgtggga acactggcca ggctggactt
241 tgccttcctc ctcgtccttt agccgggagc ctgtctttgc ttgcctttgc ctttgaggct
301 ctgtggctgt ggggctgagt ggcatcatgg cggctcagaa agatctctgg gacgccattg
361 tgattggggc ggggatccag ggctgcttca ctgcatacca cctggccaaa cacaggaaga
421 ggatcctcct gctggagcag ttctttctac cacactcccg aggaagctcc catggacaaa
481 gccggataat ccgaaaggcg tacctggaag acttttacac ccggatgatg catgagtgct
541 atcagatatg ggcccagctg gagcacgagg ctggaaccca attgcacagg cagactggat
601 tactgctgct gggaatgaaa gagaatcaag aattaaagac aatccaggcc aatctgtcga
661 ggcagagggt agaacaccag tgtctttcat ctgaggaact gaagcaacgt ttcccaaata
721 ttcggttgcc caggggagaa gtggggctct tggacaattc cggaggagtt atctatgcat
781 ataaggccct cagagccctg caggatgcaa ttcgacagct aggaggcata gtgcgtgacg
841 gagagaaggt ggtggagata aacccagggc tactggtcac ggtgaaaacc acctccagga
901 gctaccaagc taagagcttg gtcatcacag caggtccttg gaccaaccag ctcctccgtc
961 ccctgggcat tgagatgcct ctccagaccc tgcggatcaa cgtgtgttac tggcgagaga
1021 tggttcctgg gagctatggt gtgtcccagg cctttccgtg cttcctgtgg ctgggcttgt
1081 gtccccacca catctacgga ctgcccacag gagagtaccc agggctgatg aaggtcagct
1141 atcaccacgg caaccacgca gaccctgagg agcgggactg ccccacagca cgcacagaca
1201 tcggagacgt ccagatcctg agcagctttg tcagagatca cttacctgat ctgaagcccg
1261 agcctgctgt cattgagagc tgcatgtaca cgaatacccc tgatgagcag ttcattctcg
1321 atcgccaccc aaagtatgac aacattgtca ttggtgctgg attctctggg cacgggttca
1381 agctggcccc tgtggtgggg aagatcctgt atgaattaag catgaaatta acaccatctt
1441 atgacttggc accttttcga atcagccgtt tcccaagcct gggcaaagcc cacctttgac
1501 ctctggccag aagcctccct tctgtgcaca ggagccagtt tcacagatgg agaagatgtc
1561 tcagatgaag ggagtgtccc tgagatatca tccttttctt ctgcctcgcc tgaatccccc
1621 ataaacacca gatgattgag tctaccttct ttccttggcc cgctcccttt ttcttctgcc
1681 tcacttgaat cccccgtaaa caccagacga ttgagtctac cttcttttct tggccacctc
1741 cccattcaca actactttct cgctcccaga aggttgatca gatattctac aatcacagag
1801 tagcaaggac gtttgagatg ggtatatcag taagaagagg gcacaagaac tggctctgga
1861 gaccaaagca gttgttaaaa attctctttg ctgggggccg ggtgtggtgg ctcacacctg
1921 taatctcggc actttggggg gctgagacag gcggatcacc tgaggccagg aattcaagac
1981 cagcctggcc aacatggtga aaccctatct ccactaaaaa tacaaaatta gctgggtgtg
2041 gtggcgcatg cctgtaatcc cagctacttg ggagactgag gcaagagaat cacttgaacc
2101 cgggaggtgg aggtggcagt gagccgagat tgcgccattg cactccagcc tgggcaaaaa
2161 gagtgagact ctgtctcaaa aaaaaaaaaa aaaaaaaaaa aaaa
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