LOCUS BC008930 1087 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens excision repair cross-complementing rodent repair
deficiency, complementation group 1 (includes overlapping antisense
sequence), mRNA (cDNA clone MGC:1753 IMAGE:2824122), complete cds.
ACCESSION BC008930
VERSION BC008930.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1087)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1087)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC008930.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 2 Row: b Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42544170.
FEATURES Location/Qualifiers
source 1..1087
/db_xref="H-InvDB:HIT000034085"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1753 IMAGE:2824122"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1087
/gene="ERCC1"
/gene_synonym="UV20"
/db_xref="GeneID:2067"
/db_xref="HGNC:HGNC:3433"
/db_xref="MIM:126380"
CDS 63..956
/gene="ERCC1"
/gene_synonym="UV20"
/codon_start=1
/product="excision repair cross-complementing rodent
repair deficiency, complementation group 1 (includes
overlapping antisense sequence)"
/protein_id="AAH08930.1"
/db_xref="GeneID:2067"
/db_xref="HGNC:HGNC:3433"
/db_xref="MIM:126380"
/translation="MDPGKDKEGVPQPSGPPARKKFVIPLDEDEVPPGVAKPLFRSTQ
SLPTVDTSAQAAPQTYAEYAISQPLEGAGATCPTGSEPLAGETPNQALKPGAKSNSII
VSPRQRGNPVLKFVRNVPWEFGDVIPDYVLGQSTCALFLSLRYHNLHPDYIHGRLQSL
GKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLETYKAYEQK
PADLLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPG
LGPQKARRLFDVLHEPFLKVP"
BASE COUNT 296 a 327 c 289 g 175 t
ORIGIN
1 ccaagaccag caggtgaggc ctcgcggcgc tgaaaccgtg aggcccggac cacaggctcc
61 agatggaccc tgggaaggac aaagaggggg tgccccagcc ctcagggccg ccagcaagga
121 agaaatttgt gatacccctc gacgaggatg aggtccctcc tggagtggcc aagcccttat
181 tccgatctac acagagcctt cccactgtgg acacctcggc ccaggcggcc cctcagacct
241 acgccgaata tgccatctca cagcctctgg aaggggctgg ggccacgtgc cccacagggt
301 cagagcccct ggcaggagag acgcccaacc aggccctgaa acccggggca aaatccaaca
361 gcatcattgt gagccctcgg cagaggggca atcccgtact gaagttcgtg cgcaacgtgc
421 cctgggaatt tggcgacgta attcccgact atgtgctggg ccagagcacc tgtgccctgt
481 tcctcagcct ccgctaccac aacctgcacc cagactacat ccatgggcgg ctgcagagcc
541 tggggaagaa cttcgccttg cgggtcctgc ttgtccaggt ggatgtgaaa gatccccagc
601 aggccctcaa ggagctggct aagatgtgta tcctggccga ctgcacattg atcctcgcct
661 ggagccccga ggaagctggg cggtacctgg agacctacaa ggcctatgag cagaaaccag
721 cggacctcct gatggagaag ctagagcagg acttcgtctc ccgggtgact gaatgtctga
781 ccaccgtgaa gtcagtcaac aaaacggaca gtcagaccct cctgaccaca tttggatctc
841 tggaacagct catcgccgca tcaagagaag atctggcctt atgcccaggc ctgggccctc
901 agaaagcccg gaggctgttt gatgtcctgc acgagccctt cttgaaagta ccctgatgac
961 cccagctgcc aaggaaaccc ccagtgtaat aataaatcgt cctcccaggc caggctcctg
1021 ctggcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1081 aaaaaaa
//