LOCUS       BC008831                1807 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens RAR-related orphan receptor A, mRNA (cDNA clone
            MGC:12811 IMAGE:4121602), complete cds.
ACCESSION   BC008831
VERSION     BC008831.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Dec 9, 2003 this sequence version replaced BC008831.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 17 Row: f Column: 24
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 19743902.
FEATURES             Location/Qualifiers
     source          1..1807
                     /db_xref="H-InvDB:HIT000034005"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:12811 IMAGE:4121602"
                     /tissue_type="Muscle, rhabdomyosarcoma"
                     /clone_lib="NIH_MGC_17"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..1807
                     /gene="RORA"
                     /gene_synonym="NR1F1"
                     /gene_synonym="ROR1"
                     /gene_synonym="ROR2"
                     /gene_synonym="ROR3"
                     /gene_synonym="RZRA"
                     /db_xref="GeneID:6095"
                     /db_xref="HGNC:HGNC:10258"
                     /db_xref="MIM:600825"
     CDS             9..1580
                     /gene="RORA"
                     /gene_synonym="NR1F1"
                     /gene_synonym="ROR1"
                     /gene_synonym="ROR2"
                     /gene_synonym="ROR3"
                     /gene_synonym="RZRA"
                     /codon_start=1
                     /product="RAR-related orphan receptor A"
                     /protein_id="AAH08831.1"
                     /db_xref="GeneID:6095"
                     /db_xref="HGNC:HGNC:10258"
                     /db_xref="MIM:600825"
                     /translation="MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKSEPPAP
                     VRRQSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ
                     SNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV
                     QKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAV
                     SSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHL
                     AQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYV
                     VEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFK
                     SLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQ
                     LALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYK
                     ELFTSEFEPAMQIDG"
BASE COUNT          585 a          419 c          407 g          396 t
ORIGIN      
        1 gaaaaaacat ggagtcagct ccggcagccc ccgaccccgc cgccagcgag ccaggcagca
       61 gcggcgcgga cgcggccgcc ggctccaggg agaccccgct gaaccaggaa tccgcccgca
      121 agagcgagcc gcctgccccg gtgcgcagac agagctattc cagcaccagc agaggtatct
      181 cagtaacgaa gaagacacat acatctcaaa ttgaaattat tccatgcaag atctgtggag
      241 acaaatcatc aggaatccat tatggtgtca ttacatgtga aggctgcaag ggctttttca
      301 ggagaagtca gcaaagcaat gccacctact cctgtcctcg tcagaagaac tgtttgattg
      361 atcgaaccag tagaaaccgc tgccaacact gtcgattaca gaaatgcctt gccgtaggga
      421 tgtctcgaga tgctgtaaaa tttggccgaa tgtcaaaaaa gcagagagac agcttgtatg
      481 cagaagtaca gaaacaccgg atgcagcagc agcagcgcga ccaccagcag cagcctggag
      541 aggctgagcc gctgacgccc acctacaaca tctcggccaa cgggctgacg gaacttcacg
      601 acgacctcag taactacatt gacgggcaca cccctgaggg gagtaaggca gactccgccg
      661 tcagcagctt ctacctggac atacagcctt ccccagacca gtcaggtctt gatatcaatg
      721 gaatcaaacc agaaccaata tgtgactaca caccagcatc aggcttcttt ccctactgtt
      781 cgttcaccaa cggcgagact tccccaactg tgtccatggc agaattagaa caccttgcac
      841 agaatatatc taaatcgcat ctggaaacct gccaatactt gagagaagag ctccagcaga
      901 taacgtggca gaccttttta caggaagaaa ttgagaacta tcaaaacaag cagcgggagg
      961 tgatgtggca attgtgtgcc atcaaaatta cagaagctat acagtatgtg gtggagtttg
     1021 ccaaacgcat tgatggattt atggaactgt gtcaaaatga tcaaattgtg cttctaaaag
     1081 caggttctct agaggtggtg tttatcagaa tgtgccgtgc ctttgactct cagaacaaca
     1141 ccgtgtactt tgatgggaag tatgccagcc ccgacgtctt caaatcctta ggttgtgaag
     1201 actttattag ctttgtgttt gaatttggaa agagtttatg ttctatgcac ctgactgaag
     1261 atgaaattgc attattttct gcatttgtac tgatgtcagc agatcgctca tggctgcaag
     1321 aaaaggtaaa aattgaaaaa ctgcaacaga aaattcagct agctcttcaa cacgtcctac
     1381 agaagaatca ccgagaagat ggaatactaa caaagttaat atgcaaggtg tctacattaa
     1441 gagccttatg tggacgacat acagaaaagc taatggcatt taaagcaata tacccagaca
     1501 ttgtgcgact tcattttcct ccattataca aggagttgtt cacttcagaa tttgagccag
     1561 caatgcaaat tgatgggtaa atgttatcac ctaagcactt ctagaatgtc tgaagtacaa
     1621 acatgaaaaa caaacaaaaa aattaaccga gacactttat atggccctgc acagacctgg
     1681 agcgccacac actgcacatc ttttggtgat cggggtcagg caaaggaggg gaaacaatga
     1741 aaacaaataa aagttgaact tgtttttctc atgaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1801 aaaaaaa
//