LOCUS BC008831 1807 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens RAR-related orphan receptor A, mRNA (cDNA clone MGC:12811 IMAGE:4121602), complete cds. ACCESSION BC008831 VERSION BC008831.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1807) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1807) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 9, 2003 this sequence version replaced BC008831.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 17 Row: f Column: 24 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19743902. FEATURES Location/Qualifiers source 1..1807 /db_xref="H-InvDB:HIT000034005" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12811 IMAGE:4121602" /tissue_type="Muscle, rhabdomyosarcoma" /clone_lib="NIH_MGC_17" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1807 /gene="RORA" /gene_synonym="NR1F1" /gene_synonym="ROR1" /gene_synonym="ROR2" /gene_synonym="ROR3" /gene_synonym="RZRA" /db_xref="GeneID:6095" /db_xref="HGNC:HGNC:10258" /db_xref="MIM:600825" CDS 9..1580 /gene="RORA" /gene_synonym="NR1F1" /gene_synonym="ROR1" /gene_synonym="ROR2" /gene_synonym="ROR3" /gene_synonym="RZRA" /codon_start=1 /product="RAR-related orphan receptor A" /protein_id="AAH08831.1" /db_xref="GeneID:6095" /db_xref="HGNC:HGNC:10258" /db_xref="MIM:600825" /translation="MESAPAAPDPAASEPGSSGADAAAGSRETPLNQESARKSEPPAP VRRQSYSSTSRGISVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQ SNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEV QKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSNYIDGHTPEGSKADSAV SSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHL AQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYV VEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFK SLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQ LALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYK ELFTSEFEPAMQIDG" BASE COUNT 585 a 419 c 407 g 396 t ORIGIN 1 gaaaaaacat ggagtcagct ccggcagccc ccgaccccgc cgccagcgag ccaggcagca 61 gcggcgcgga cgcggccgcc ggctccaggg agaccccgct gaaccaggaa tccgcccgca 121 agagcgagcc gcctgccccg gtgcgcagac agagctattc cagcaccagc agaggtatct 181 cagtaacgaa gaagacacat acatctcaaa ttgaaattat tccatgcaag atctgtggag 241 acaaatcatc aggaatccat tatggtgtca ttacatgtga aggctgcaag ggctttttca 301 ggagaagtca gcaaagcaat gccacctact cctgtcctcg tcagaagaac tgtttgattg 361 atcgaaccag tagaaaccgc tgccaacact gtcgattaca gaaatgcctt gccgtaggga 421 tgtctcgaga tgctgtaaaa tttggccgaa tgtcaaaaaa gcagagagac agcttgtatg 481 cagaagtaca gaaacaccgg atgcagcagc agcagcgcga ccaccagcag cagcctggag 541 aggctgagcc gctgacgccc acctacaaca tctcggccaa cgggctgacg gaacttcacg 601 acgacctcag taactacatt gacgggcaca cccctgaggg gagtaaggca gactccgccg 661 tcagcagctt ctacctggac atacagcctt ccccagacca gtcaggtctt gatatcaatg 721 gaatcaaacc agaaccaata tgtgactaca caccagcatc aggcttcttt ccctactgtt 781 cgttcaccaa cggcgagact tccccaactg tgtccatggc agaattagaa caccttgcac 841 agaatatatc taaatcgcat ctggaaacct gccaatactt gagagaagag ctccagcaga 901 taacgtggca gaccttttta caggaagaaa ttgagaacta tcaaaacaag cagcgggagg 961 tgatgtggca attgtgtgcc atcaaaatta cagaagctat acagtatgtg gtggagtttg 1021 ccaaacgcat tgatggattt atggaactgt gtcaaaatga tcaaattgtg cttctaaaag 1081 caggttctct agaggtggtg tttatcagaa tgtgccgtgc ctttgactct cagaacaaca 1141 ccgtgtactt tgatgggaag tatgccagcc ccgacgtctt caaatcctta ggttgtgaag 1201 actttattag ctttgtgttt gaatttggaa agagtttatg ttctatgcac ctgactgaag 1261 atgaaattgc attattttct gcatttgtac tgatgtcagc agatcgctca tggctgcaag 1321 aaaaggtaaa aattgaaaaa ctgcaacaga aaattcagct agctcttcaa cacgtcctac 1381 agaagaatca ccgagaagat ggaatactaa caaagttaat atgcaaggtg tctacattaa 1441 gagccttatg tggacgacat acagaaaagc taatggcatt taaagcaata tacccagaca 1501 ttgtgcgact tcattttcct ccattataca aggagttgtt cacttcagaa tttgagccag 1561 caatgcaaat tgatgggtaa atgttatcac ctaagcactt ctagaatgtc tgaagtacaa 1621 acatgaaaaa caaacaaaaa aattaaccga gacactttat atggccctgc acagacctgg 1681 agcgccacac actgcacatc ttttggtgat cggggtcagg caaaggaggg gaaacaatga 1741 aaacaaataa aagttgaact tgtttttctc atgaaaaaaa aaaaaaaaaa aaaaaaaaaa 1801 aaaaaaa //