LOCUS BC008823 944 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neuron derived neurotrophic factor, mRNA (cDNA clone
MGC:12619 IMAGE:4303614), complete cds.
ACCESSION BC008823
VERSION BC008823.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 944)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 944)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC008823.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: o Column: 14.
FEATURES Location/Qualifiers
source 1..944
/db_xref="H-InvDB:HIT000033998"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12619 IMAGE:4303614"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..944
/gene="NENF"
/gene_synonym="CIR2"
/gene_synonym="SCIRP10"
/gene_synonym="SPUF"
/db_xref="GeneID:29937"
/db_xref="HGNC:HGNC:30384"
CDS 7..525
/gene="NENF"
/gene_synonym="CIR2"
/gene_synonym="SCIRP10"
/gene_synonym="SPUF"
/codon_start=1
/product="neuron derived neurotrophic factor"
/protein_id="AAH08823.1"
/db_xref="GeneID:29937"
/db_xref="HGNC:HGNC:30384"
/translation="MVGPAPRRRLRPLAALALVLALAPGLPTARAGQTPRPAERGPPV
RLFTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAK
MSLDPADLTHDTTGLTAKELEALDEVFTKVYKAKYPIVGYTARRILNEDGSPNLDFKP
EDQPHFDIKDEF"
BASE COUNT 250 a 250 c 259 g 185 t
ORIGIN
1 ctcaccatgg tgggccccgc gccgcggcgg cggctgcggc cgctggcagc gctggccctg
61 gtcctggcgc tggccccggg gctgcccaca gcccgggccg ggcagacacc gcgccctgcc
121 gagcgggggc ccccagtgcg gcttttcacc gaggaggagc tggcccgcta tggcggggag
181 gaggaagatc agcccatcta cttggcagtg aagggagtgg tgtttgatgt cacctccgga
241 aaggagtttt atggacgagg agccccctac aatgccttga cggggaagga ctccactaga
301 ggggtagcca agatgtcctt ggatcctgca gacctcaccc atgacactac gggtctcacg
361 gccaaggaac tggaggccct ggatgaggtc ttcaccaaag tgtacaaagc caaatacccc
421 atcgtcggct acactgcccg gagaattctc aatgaggatg gcagccctaa cctggacttc
481 aagcctgaag accagcccca ttttgacatc aaggatgagt tctgatgttc cccctgcagg
541 agcaggttct tgggagcgtg aggcaggaag acactaggtg ctgaatctcc tgcaaaactg
601 gctgcctgga ggccctgagc cacccagatc tgaataaaac agatgcttac cctggaagag
661 caaatgcctc ctgttgtctt tggtcagggg ttctgtctac ctggggaccc ctgtctgcac
721 accagggatc aataagagcc aaagtgggac acctcctaga tgtcagtatc agctggctgg
781 gcagtggaat tttgagcgac ctttacttta tacttttctg tgcttgacag attttcagcc
841 atgaccatgt tcactttata atcaaaacaa aaataaaggt cccattttta caaaaggaaa
901 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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