LOCUS BC008797 1603 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens 3-ketodihydrosphingosine reductase, mRNA (cDNA clone MGC:3707 IMAGE:3636291), complete cds. ACCESSION BC008797 VERSION BC008797.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1603) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1603) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC008797.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 12 Row: d Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4503816 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..1603 /db_xref="H-InvDB:HIT000033977" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:3707 IMAGE:3636291" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1603 /gene="KDSR" /gene_synonym="DHSR" /gene_synonym="SDR35C1" /db_xref="GeneID:2531" /db_xref="HGNC:HGNC:4021" /db_xref="MIM:136440" CDS 135..1133 /gene="KDSR" /gene_synonym="DHSR" /gene_synonym="SDR35C1" /codon_start=1 /product="KDSR protein" /protein_id="AAH08797.1" /db_xref="GeneID:2531" /db_xref="HGNC:HGNC:4021" /db_xref="MIM:136440" /translation="MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGI GKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVE NVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTM KERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPD TDTPGFAEENRTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSA LTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQREKSENADKTA" BASE COUNT 439 a 373 c 385 g 406 t ORIGIN 1 gccccggccc gcaaacccaa acactccagg cgcccgcccg ccgcgcgtga ttctcgcctc 61 gccgcagccc agccctgcgc gccttgcccg gcggcccccg cccggccgct ccgggcccct 121 ggccccgcgg agcgatgctg ctgctggctg ccgccttcct cgtggccttc gtgctgctgc 181 tgtacatggt gtctccgctc atcagcccca agcccctcgc cctgcccggg gcgcatgtgg 241 tggttacagg aggttccagt ggcatcggga agtgcattgc tatcgagtgc tataaacaag 301 gagcttttat aactctggtt gcacgaaatg aggataagct gctgcaggca aagaaagaaa 361 ttgaaatgca ctctattaat gacaaacagg tggtactttg catatcagtt gatgtatctc 421 aagactataa ccaagtagag aatgtcataa aacaagcaca ggagaaactg ggtccagtgg 481 acatgctggt aaattgtgca ggaatggcag tgtcaggaaa atttgaagat cttgaagtta 541 gtacctttga aaggttaatg agcatcaatt acctgggcag cgtgtacccc agccgggccg 601 tgatcaccac catgaaggag cgccgggtgg gcaggatcgt gtttgtgtcc tcccaggcag 661 gacagttggg attattcggt ttcacagcct actctgcatc caagtttgcc ataaggggat 721 tggcagaagc tttgcagatg gaggtgaagc catataatgt ctacatcaca gttgcttacc 781 caccagacac agacacacct ggctttgccg aagaaaacag aacaaagcct ttggagactc 841 gacttatttc agagaccaca tctgtgtgca aaccagaaca ggtggccaaa caaattgtta 901 aagatgccat acaaggaaat ttcaacagtt cccttggctc agatgggtac atgctctcgg 961 ccctgacctg tgggatggct ccagtaactt ctattactga ggggctccag caggtggtca 1021 ccatgggcct tttccgcact attgctttgt tttaccttgg aagttttgac agcatagttc 1081 gtcgctgcat gatgcagaga gaaaaatctg aaaatgcaga caaaactgcc taatcttctt 1141 accccttgga agaagactgt ttccaaataa tttgaacagc ttgctgctaa atgggaccca 1201 atttttggcc tatagacact tatgtattgt tttcgaatac gtcagattgg accagtgctc 1261 ttcaggaatg tggctgcaag caaggggcta gaagttcacc tcctgacagt attattaata 1321 ctatgcaaat atggaatagg agaccatttg attttctagg ctttgtggta gagaggtgaa 1381 ggtatgagaa ttaatagcgt gtgaacaaag taaagaacag gattccagaa tgatcattaa 1441 atttgtttct atttattctt ttttgccccc ctagagatta agtccagaaa tgtactttct 1501 ggcacataaa gaaatcttga ggactttgtt taaaccttcc ataaaaaaac aattttgctt 1561 atactgctgt aatatttttg taaaaaaaaa aaaaaaaaaa aaa //