LOCUS BC008745 1430 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cartilage associated protein, mRNA (cDNA clone
MGC:1926 IMAGE:3347384), complete cds.
ACCESSION BC008745
VERSION BC008745.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1430)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1430)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC008745.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 24.
FEATURES Location/Qualifiers
source 1..1430
/db_xref="H-InvDB:HIT000033940"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1926 IMAGE:3347384"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1430
/gene="CRTAP"
/gene_synonym="CASP"
/db_xref="GeneID:10491"
/db_xref="HGNC:HGNC:2379"
/db_xref="MIM:605497"
CDS 27..1232
/gene="CRTAP"
/gene_synonym="CASP"
/codon_start=1
/product="cartilage associated protein"
/protein_id="AAH08745.1"
/db_xref="GeneID:10491"
/db_xref="HGNC:HGNC:2379"
/db_xref="MIM:605497"
/translation="MEPGRRGAAALLALLCVACALRAGRAQYERYSFRSFPRDELMPL
ESAYRHALDKYSGEHWAESVGYLEISLRLHRLLRDSEAFCHRNCSAAPQPEPAAGLAS
YPELRLFGGLLRRAHCLKRCKQGLPAFRQSQPSRDVLADFQRREPYKFLQFAYFKANN
LPKAIAAAHTFLLKHPDDEMMKRNMAYYKSLPGAEDYIKDLETKSYESLFIRAVRAYN
GENWRTSITDMELALPDFFKAFYECLAACEGSREIKDFKDFYLSIADHYVEVLECKIQ
CEENLTPVIGGYPVEKFVATMYHYLQFAYYKLNDLKNAAPCAVSYLLFDQNDKVMQQN
LVYYQYHRDTWGLSDEHFQPRPEAVQFFNVTTLQKELYDFAKENIMDDDEGEVVEYVD
DLLELEETS"
BASE COUNT 360 a 413 c 370 g 287 t
ORIGIN
1 ttccttcctt cctttcgccg ggcgcgatgg agccggggcg ccggggggcc gcggcgctgc
61 tagcgctgct gtgcgtggcc tgcgcgctgc gcgccgggcg cgcccaatac gaacgctaca
121 gcttccgcag cttcccacgg gacgagctga tgccgctcga gtcggcctac cggcacgcgc
181 tggacaagta cagcggcgag cactgggccg agagcgtggg ctacctggag atcagcctgc
241 ggctgcaccg cttgctgcgc gacagcgagg ccttctgcca ccgcaactgc agcgccgcgc
301 cgcagcccga gcccgccgcc ggcctcgcca gctatcccga gctgcgcctc ttcgggggcc
361 tgctgcgccg cgcgcactgc ctcaagcgct gcaagcaggg cctgccagcc ttccgccagt
421 cccagcccag ccgcgatgtg ctggcggact tccagcgccg cgagccctac aagttcctgc
481 agttcgctta cttcaaggca aataatctcc ccaaagccat cgccgctgct cacacctttc
541 tactgaagca tcctgatgac gaaatgatga agaggaacat ggcatattat aagagcctgc
601 ctggtgccga ggactacatt aaagacctgg aaaccaagtc atatgaaagc ctgttcatcc
661 gagcagtgcg ggcatacaac ggtgagaact ggagaacatc catcacagac atggagctgg
721 cccttcccga cttcttcaaa gccttttacg agtgtctcgc agcctgcgag ggttccaggg
781 agatcaagga cttcaaggat ttctaccttt ccatagcaga tcattatgta gaagttctgg
841 aatgcaaaat acagtgtgaa gagaacctca ccccagttat aggaggctat ccggttgaga
901 aatttgtggc taccatgtat cattacttgc agtttgccta ttataagttg aacgacctga
961 agaatgcagc cccctgtgca gtcagctatc tgctctttga tcagaatgac aaggtcatgc
1021 agcagaacct ggtgtattac cagtaccaca gggacacgtg gggcctctca gatgagcact
1081 tccagcccag acctgaagca gttcagttct ttaatgtgac cacactccag aaggagctgt
1141 atgactttgc taaggaaaat ataatggatg atgatgaggg agaagttgtg gaatatgtgg
1201 atgacctctt ggaactggag gagaccagct agcccacagc aaccaaagag acttcctctt
1261 ggcgttcagg aaacacagat tctttgtcct tttcccaaca gcccaggctg ttgatacctc
1321 agagccttct ctttactctc caaagtgaaa gggaagcccc cgtccctcta cctgcacgac
1381 aacacataaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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