LOCUS BC008732 2058 bp mRNA linear HUM 17-NOV-2006 DEFINITION Homo sapiens anterior pharynx defective 1 homolog A (C. elegans), mRNA (cDNA clone MGC:706 IMAGE:3162330), complete cds. ACCESSION BC008732 VERSION BC008732.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2058) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2058) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC008732.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: m Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7705786. FEATURES Location/Qualifiers source 1..2058 /db_xref="H-InvDB:HIT000033930" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:706 IMAGE:3162330" /tissue_type="Brain, neuroblastoma" /clone_lib="NIH_MGC_19" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2058 /gene="APH1A" /gene_synonym="6530402N02Rik" /gene_synonym="APH-1A" /gene_synonym="CGI-78" /db_xref="GeneID:51107" /db_xref="HGNC:HGNC:29509" /db_xref="MIM:607629" CDS 157..900 /gene="APH1A" /gene_synonym="6530402N02Rik" /gene_synonym="APH-1A" /gene_synonym="CGI-78" /codon_start=1 /product="anterior pharynx defective 1 homolog A (C. elegans)" /protein_id="AAH08732.1" /db_xref="GeneID:51107" /db_xref="HGNC:HGNC:29509" /db_xref="MIM:607629" /translation="MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLV SLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLA SLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTS AFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIY AVTVSMGLWAFITAGGSLRSIQRSLLCKD" BASE COUNT 377 a 571 c 542 g 568 t ORIGIN 1 gttccccccc ttccccttcc ccggggtctg ggggtgacat tgcaccgcgc ccctcgtggg 61 gtcgcgttgc caccccacgc ggactcccca gctggcgcgc ccctcccatt tgcctgtcct 121 ggtcaggccc ccacccccct tcccacctga ccagccatgg gggctgcggt gtttttcggc 181 tgcactttcg tcgcgttcgg cccggccttc gcgcttttct tgatcactgt ggctggggac 241 ccgcttcgcg ttatcatcct ggtcgcaggg gcatttttct ggctggtctc cctgctcctg 301 gcctctgtgg tctggttcat cttggtccat gtgaccgacc ggtcagatgc ccggctccag 361 tacggcctcc tgatttttgg tgctgctgtc tctgtccttc tacaggaggt gttccgcttt 421 gcctactaca agctgcttaa gaaggcagat gaggggttag catcgctgag tgaggacgga 481 agatcaccca tctccatccg ccagatggcc tatgtttctg gtctctcctt cggtatcatc 541 agtggtgtct tctctgttat caatattttg gctgatgcac ttgggccagg tgtggttggg 601 atccatggag actcacccta ttacttcctg acttcagcct ttctgacagc agccattatc 661 ctgctccata ccttttgggg agttgtgttc tttgatgcct gtgagaggag acggtactgg 721 gctttgggcc tggtggttgg gagtcaccta ctgacatcgg gactgacatt cctgaacccc 781 tggtatgagg ccagcctgct gcccatctat gcagtcactg tttccatggg gctctgggcc 841 ttcatcacag ctggagggtc cctccgaagt attcagcgca gcctcttgtg taaggactga 901 ctacctggac tgatcgcctg acagatccca cctgcctgtc cactgcccat gactgagccc 961 agccccagcc cgggtccatt gcccacattc tctgtctcct tctcgtcggt ctaccccact 1021 acctccaggg ttttgctttg tccttttgtg accgttagtc tctaagcttt accaggagca 1081 gcctgggttc agccagtcag tgactggtgg gtttgaatct gcacttatcc ccaccacctg 1141 gggaccccct tgttgtgtcc aggactcccc ctgtgtcagt gctctgctct caccctgccc 1201 aagactcacc tcccttcccc tctgcaggcc gacggcagga ggacagtcgg gtgatggtgt 1261 attctgccct gcgcatccca cccgaggact gagggaacct aggggggacc cctgggcctg 1321 gggtgccctc ctgatgtcct cgccctgtat ttctccatct ccagttctgg acagtgcagg 1381 ttgccaagaa aagggaccta gtttagccat tgccctggag atgaaattaa tggaggctca 1441 aggatagatg agctctgagt ttctcagtac tccctcaaga ctggacatct tggtcttttt 1501 ctcaggcctg agggggaacc atttttggtg tgataaatac cctaaactgc ctttttttct 1561 tttttgaggt ggggggaggg aggaggtata ttggaactct tctaacctcc ttgggctata 1621 ttttctctcc tcgagttgct cctcatggct gggctcattt cggtcccttt ctccttggtc 1681 ccagaccttg ggggaaagga aggaagtgca tgtttgggaa ctggcattac tggaactaat 1741 ggttttaacc tccttaacca ccagcatccc tcctctcccc aaggtgaagt ggagggtgct 1801 gtggtgagct ggccactcca gagctgcagt gccactggag gagtcagact accatgacat 1861 cgtagggaag gaggggagat ttttttgtag tttttaattg gggtgtggga ggggcgggga 1921 ggttttctat aaactgtatc attttctgct gagggtggag tgtcccatcc ttttaatcaa 1981 ggtgattgtg attttgacta ataaaaaaga atttgtaaaa aaaaaaaaaa aaaaaaaaaa 2041 aaaaaaaaaa aaaaaaaa //