LOCUS BC008692 1892 bp mRNA linear HUM 04-AUG-2008 DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 11, mRNA (cDNA clone MGC:17206 IMAGE:3872007), complete cds. ACCESSION BC008692 VERSION BC008692.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1892) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1892) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 13 Row: k Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 33356176. FEATURES Location/Qualifiers source 1..1892 /db_xref="H-InvDB:HIT000033905" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17206 IMAGE:3872007" /tissue_type="Eye, retinoblastoma" /clone_lib="NIH_MGC_67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1892 /gene="PTPN11" /gene_synonym="BPTP3" /gene_synonym="CFC" /gene_synonym="PTP-1D" /gene_synonym="PTP2C" /gene_synonym="SH-PTP2" /gene_synonym="SH-PTP3" /gene_synonym="SHP2" /db_xref="GeneID:5781" /db_xref="HGNC:HGNC:9644" /db_xref="MIM:176876" CDS 204..1586 /gene="PTPN11" /gene_synonym="BPTP3" /gene_synonym="CFC" /gene_synonym="PTP-1D" /gene_synonym="PTP2C" /gene_synonym="SH-PTP2" /gene_synonym="SH-PTP3" /gene_synonym="SHP2" /codon_start=1 /product="PTPN11 protein" /protein_id="AAH08692.1" /db_xref="GeneID:5781" /db_xref="HGNC:HGNC:9644" /db_xref="MIM:176876" /translation="MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLS VRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPL NCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGES NDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNT TRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNK NRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCL QNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESA AHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIM DAGPVVVHCR" BASE COUNT 564 a 421 c 498 g 409 t ORIGIN 1 gcggaggagg agcgagccgg gccggggggc agctgcacag tctccgggat ccccaggcct 61 ggaggggggt ctgtgcgcgg ccggctggct ctgccccgcg tccggtcccg agcgggcctc 121 cctcgggcca gcccgatgtg accgagccca gcggagcctg agcaaggagc gggtccgtcg 181 cggagccgga gggcgggagg aacatgacat cgcggagatg gtttcaccca aatatcactg 241 gtgtggaggc agaaaaccta ctgttgacaa gaggagttga tggcagtttt ttggcaaggc 301 ctagtaaaag taaccctgga gacttcacac tttccgttag aagaaatgga gctgtcaccc 361 acatcaagat tcagaacact ggtgattact atgacctgta tggaggggag aaatttgcca 421 ctttggctga gttggtccag tattacatgg aacatcacgg gcaattaaaa gagaagaatg 481 gagatgtcat tgagcttaaa tatcctctga actgtgcaga tcctacctct gaaaggtggt 541 ttcatggaca tctctctggg aaagaagcag agaaattatt aactgaaaaa ggaaaacatg 601 gtagttttct tgtacgagag agccagagcc accctggaga ttttgttctt tctgtgcgca 661 ctggtgatga caaaggggag agcaatgacg gcaagtctaa agtgacccat gttatgattc 721 gctgtcagga actgaaatac gacgttggtg gaggagaacg gtttgattct ttgacagatc 781 ttgtggaaca ttataagaag aatcctatgg tggaaacatt gggtacagta ctacaactca 841 agcagcccct taacacgact cgtataaatg ctgctgaaat agaaagcaga gttcgagaac 901 taagcaaatt agctgagacc acagataaag tcaaacaagg cttttgggaa gaatttgaga 961 cactacaaca acaggagtgc aaacttctct acagccgaaa agagggtcaa aggcaagaaa 1021 acaaaaacaa aaatagatat aaaaacatcc tgccctttga tcataccagg gttgtcctac 1081 acgatggtga tcccaatgag cctgtttcag attacatcaa tgcaaatatc atcatgcctg 1141 aatttgaaac caagtgcaac aattcaaagc ccaaaaagag ttacattgcc acacaaggct 1201 gcctgcaaaa cacggtgaat gacttttggc ggatggtgtt ccaagaaaac tcccgagtga 1261 ttgtcatgac aacgaaagaa gtggagagag gaaagagtaa atgtgtcaaa tactggcctg 1321 atgagtatgc tctaaaagaa tatggcgtca tgcgtgttag gaacgtcaaa gaaagcgccg 1381 ctcatgacta tacgctaaga gaacttaaac tttcaaaggt tggacaaggg aatacggaga 1441 gaacggtctg gcaataccac tttcggacct ggccggacca cggcgtgccc agcgaccctg 1501 ggggcgtgct ggacttcctg gaggaggtgc accataagca ggagagcatc atggatgcag 1561 ggccggtcgt ggtgcactgc aggtgacagc tcctgctgcc cctctaggcc acagcctgtc 1621 cctgtctcct agcgcccagg gcttgctttt acctacccac tcctagctct ttaactgtag 1681 gaagaattta atatctgttt gaggcataga gcaactgcat tgagggacat tttgatccca 1741 aggcatattt ctcctagacc ctacagcact gccattggcc atggccatgg caacatgctc 1801 agttaaaaca gcaaagacta agtcagcatt atctctgagt ccaccagaag ttgtgcatta 1861 aacaacttca tcctggaaaa aaaaaaaaaa aa //