LOCUS       BC008568                1801 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens chitinase 3-like 1 (cartilage glycoprotein-39), mRNA
            (cDNA clone MGC:17093 IMAGE:4212748), complete cds.
ACCESSION   BC008568
VERSION     BC008568.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1801)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAY-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: David N. Louis, M.D.
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 12 Row: m Column: 14
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 4557017.
FEATURES             Location/Qualifiers
     source          1..1801
                     /db_xref="H-InvDB:HIT000033841"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:17093 IMAGE:4212748"
                     /tissue_type="Brain, glioblastoma with EGFR amplification"
                     /clone_lib="NCI_CGAP_Brn64"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1801
                     /gene="CHI3L1"
                     /gene_synonym="GP39"
                     /gene_synonym="HC-gp39"
                     /gene_synonym="HCGP-3P"
                     /gene_synonym="YKL40"
                     /db_xref="GeneID:1116"
                     /db_xref="HGNC:HGNC:1932"
                     /db_xref="MIM:601525"
     CDS             118..1269
                     /gene="CHI3L1"
                     /gene_synonym="GP39"
                     /gene_synonym="HC-gp39"
                     /gene_synonym="HCGP-3P"
                     /gene_synonym="YKL40"
                     /codon_start=1
                     /product="chitinase 3-like 1 (cartilage glycoprotein-39)"
                     /protein_id="AAH08568.1"
                     /db_xref="GeneID:1116"
                     /db_xref="HGNC:HGNC:1932"
                     /db_xref="MIM:601525"
                     /translation="MGVKASQTGFVVLVLLQCCSAYKLVCYYTSWSQYREGDGSCFPD
                     ALDRFLCTHIIYSFANISNDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFG
                     SQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRRDKQHFTTLIKEMKAE
                     FIKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGH
                     HSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLASSETGVGA
                     PISGPGIPGRFTKEAGTLAYYEICDFLRGATVHRILGQQVPYATKGNQWVGYDDQESV
                     KSKVQYLKDRQLAGAMVWALDLDDFQGSFCGQDLRFPLTNAIKDALAAT"
BASE COUNT          450 a          518 c          462 g          371 t
ORIGIN      
        1 ggacaggtat ataaaggaag tacagggcct ggggaagagg ccctgtctag gtagctggca
       61 ccaggagccg tgggcaaggg aagaggccac accctgccct gctctgctgc agccagaatg
      121 ggtgtgaagg cgtctcaaac aggctttgtg gtcctggtgc tgctccagtg ctgctctgca
      181 tacaaactgg tctgctacta caccagctgg tcccagtacc gggaaggcga tgggagctgc
      241 ttcccagatg cccttgaccg cttcctctgt acccacatca tctacagctt tgccaatata
      301 agcaacgatc acatcgacac ctgggagtgg aatgatgtga cgctctacgg catgctcaac
      361 acactcaaga acaggaaccc caacctgaag actctcttgt ctgtcggagg atggaacttt
      421 gggtctcaaa gattttccaa gatagcctcc aacacccaga gtcgccggac tttcatcaag
      481 tcagtaccgc catttctgcg cacccatggc tttgatgggc tggaccttgc ctggctctac
      541 cctggacgga gagacaaaca gcattttacc accctaatca aggaaatgaa ggccgaattt
      601 ataaaggaag cccagccagg gaaaaagcag ctcctgctca gcgcagcact gtctgcgggg
      661 aaggtcacca ttgacagcag ctatgacatt gccaagatat cccaacacct ggatttcatt
      721 agcatcatga cctacgattt tcatggagcc tggcgtggga ccacaggcca tcacagtccc
      781 ctgttccgag gtcaggagga tgcaagtcct gacagattca gcaacactga ctatgctgtg
      841 gggtacatgt tgaggctggg ggctcctgcc agtaagctgg tgatgggcat ccccaccttc
      901 gggaggagct tcactctggc ttcttctgag actggtgttg gagccccaat ctcaggaccg
      961 ggaattccag gccggttcac caaggaggca gggacccttg cctactatga gatctgtgac
     1021 ttcctccgcg gagccacagt ccatagaatc ctcggccagc aggtccccta tgccaccaag
     1081 ggcaaccagt gggtaggata cgacgaccag gaaagcgtca aaagcaaggt gcagtacctg
     1141 aaggacaggc agctggcggg cgccatggta tgggccctgg acctggatga cttccagggc
     1201 tccttctgcg gccaggatct gcgcttccct ctcaccaatg ccatcaagga tgcactcgct
     1261 gcaacgtagc cctctgttct gcacacagca cgggggccaa ggatgccccg tccccctctg
     1321 gctccagctg gccgggagcc tgatcacctg ccctgctgag tcccaggctg agcctcagtc
     1381 tccctccctt ggggcctatg cagaggtcca caacacacag atttgagctc agccctggtg
     1441 ggcagagagg tagggatggg gctgtgggga tagtgaggca tcgcaatgta agactcggga
     1501 ttagtacaca cttgttgatt aatggaaatg tttacagatc cccaagcctg gcaagggaat
     1561 ttcttcaact ccctgccccc cagccctcct tatcaaagga caccattttg gcaagctcta
     1621 tcaccaagga gccaaacatc ctacaagaca cagtgaccat actaattata ccccctgcaa
     1681 agcccagctt gaaaccttca cttaggaacg taatcgtgtc ccctatccta cttccccttc
     1741 ctaattccac agctgctcaa taaagtacaa gagcttaaaa aaaaaaaaaa aaaaaaaaaa
     1801 a
//