LOCUS BC008444 1224 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sorting nexin 3, mRNA (cDNA clone MGC:14662 IMAGE:4102735), complete cds. ACCESSION BC008444 VERSION BC008444.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1224) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1224) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 21 Row: l Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 23111040. FEATURES Location/Qualifiers source 1..1224 /db_xref="H-InvDB:HIT000033796" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:14662 IMAGE:4102735" /tissue_type="Brain, glioblastoma" /clone_lib="NIH_MGC_57" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1224 /gene="SNX3" /gene_synonym="MGC17570" /gene_synonym="SDP3" /gene_synonym="SNX3A" /db_xref="GeneID:8724" /db_xref="HGNC:HGNC:11174" /db_xref="MIM:605930" CDS 98..586 /gene="SNX3" /gene_synonym="MGC17570" /gene_synonym="SDP3" /gene_synonym="SNX3A" /codon_start=1 /product="sorting nexin 3" /protein_id="AAH08444.1" /db_xref="GeneID:8724" /db_xref="HGNC:HGNC:11174" /db_xref="MIM:605930" /translation="MAETVADTRRLITKPQNLNDAYGPPSNFLEIDVSNPQTVGVGRG RFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKAFLRQLP FRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQDEIIDKSYTPSKIR HA" BASE COUNT 371 a 254 c 267 g 332 t ORIGIN 1 agccccgtgt ccccacggcg ggcagcagcg gcggcggcgg cggctgaacg cggagggggc 61 ggagggagcc cgcggcggcg gcagcagcta cagcgaaatg gcggagaccg tggctgacac 121 ccggcggctg atcaccaagc cgcagaacct gaatgacgcc tacggacccc ccagcaactt 181 cctcgagatc gatgtgagca acccgcaaac ggtgggggtc ggccggggcc gcttcaccac 241 ttacgaaatc agggtcaaga caaatcttcc tattttcaag ctgaaagaat ctactgttag 301 aagaagatac agtgactttg aatggctgcg aagtgaatta gaaagagaga gcaaggtcgt 361 agttcccccg ctccctggga aagcgttttt gcgtcagctt ccttttagag gagatgatgg 421 aatatttgat gacaatttta ttgaggaaag aaaacaaggg ctggagcagt ttataaacaa 481 ggtcgctggt catcctctgg cacagaacga acgttgtctt cacatgtttt tacaagatga 541 aataatagat aaaagctata ctccatctaa aataagacat gcctgaaatt tggcaagaag 601 gggcaaaaac gtgactatta atgattgata agcaccagtg aagaagttct aacttttagc 661 atgctgcaca gaaactggta taacatgcct tcagtatact aacactcata tgctcagttt 721 tgttttgttt tggcagttga caagaagtta atttgcttta gtaaaaatcc ctcattccag 781 cctttctata taaatagctc tttcttgctg ttttaatgtg gtgcacacta tagcctcaca 841 aacctgttat tccagtgtaa tctgcagtgt cgtaactaaa gttactggct tggtcttatt 901 tgcacagttt ttgcgtcttg tttgcttctt gcatctgatt aactagaata tttctctttc 961 ccccttttaa tttgtgatgt cacttgaccc catttatgtg taggagcact acaccattgg 1021 tttccaatac tgcacacata agatacatac ttgtgtgcag aaagtatctt cctccaggct 1081 tgtaataccc ttcacatgga agattaatga gggaaatctt tatattctgt ataaaaacaa 1141 aagcaaattt atatactaaa atcatttgtc taaaaattta agttgttttc aaataaaaaa 1201 aaaaaaaaaa aaaaaaaaaa aaaa //