LOCUS BC008403 1202 bp mRNA linear HUM 28-SEP-2004
DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 1,
mRNA (cDNA clone MGC:14522 IMAGE:4272571), complete cds.
ACCESSION BC008403
VERSION BC008403.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1202)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1202)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: i Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26665892.
FEATURES Location/Qualifiers
source 1..1202
/db_xref="H-InvDB:HIT000033765_04"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14522 IMAGE:4272571"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1202
/gene="HLA-DRB1"
/gene_synonym="HLA-DR1B"
/db_xref="GeneID:3123"
/db_xref="MIM:142857"
CDS 64..864
/gene="HLA-DRB1"
/gene_synonym="HLA-DR1B"
/codon_start=1
/product="HLA-DRB1 protein"
/protein_id="AAH08403.1"
/db_xref="GeneID:3123"
/db_xref="MIM:142857"
/translation="MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSEC
HFFNGTERVRFLDRYFYNQEEYVRFDSDVGEYRAVTELGRPSAEYWNSQKDILEDKRA
AVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRW
FRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR
ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS"
BASE COUNT 277 a 316 c 328 g 281 t
ORIGIN
1 atagttctcc ctgagtgaga cttgcctgct gctctggccc ctggtcctgt cctgttctcc
61 agcatggtgt gtctgaggct ccctggaggc tcctgcatgg cagttctgac agtgacactg
121 atggtgctga gctccccact ggctttggct ggggacacca gaccacgttt cttggagtac
181 tctacgtctg agtgtcattt cttcaatggg acggagcggg tgcggttcct ggacagatac
241 ttctataacc aagaggagta cgtgcgcttc gacagcgacg tgggggagta ccgggcggtg
301 acggagctgg ggcggcctag cgccgagtac tggaacagcc agaaggacat cctggaagac
361 aagcgggccg cggtggacac ctactgcaga cacaactacg gggttggtga gagcttcacg
421 gtgcagcggc gagtccatcc taaggtgact gtgtatcctt caaagaccca gcccctgcag
481 caccacaacc tcctggtctg ttctgtgagt ggtttctatc caggcagcat tgaagtcagg
541 tggttccgga atggccagga agagaagact ggggtggtgt ccacaggcct gatccacaat
601 ggagactgga ccttccagac cctggtgatg ctggaaacag ttcctcggag tggagaggtt
661 tacacctgcc aagtggagca cccaagcgtg acaagccctc tcacagtgga atggagagca
721 cggtctgaat ctgcacagag caagatgctg agtggagtcg ggggctttgt gctgggcctg
781 ctcttccttg gggccgggct gttcatctac ttcaggaatc agaaaggaca ctctggactt
841 cagccaagag gattcctgag ctgaagtgca gatgacacat tcaaagaaga actttctgcc
901 ccagctttgc aggatgaaaa gctttccctc ctggctgtta ttcttccaca agagagggct
961 ttctcaggac ctggttgcta ctggttcagc aactgcagaa aatgtcctcc cttgtggctt
1021 cctcagctcc tgttcttggc ctgaagccca cagctttgat ggcagcgcct catcttcaac
1081 ttttgtgctc ccctttgcct aaaccctatt gcctcctgtg catctgtact caccctgtac
1141 cacaaacaca ttacattatt aaatgtttcc caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1201 aa
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