LOCUS BC008328 1518 bp mRNA linear HUM 19-APR-2005
DEFINITION Homo sapiens PAX interacting (with transcription-activation domain)
protein 1, mRNA (cDNA clone IMAGE:3503689), partial cds.
ACCESSION BC008328
VERSION BC008328.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1518)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1518)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: c Column: 4.
FEATURES Location/Qualifiers
source 1..1518
/db_xref="H-InvDB:HIT000087035"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3503689"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1518
/gene="PAXIP1"
/gene_synonym="CAGF28"
/gene_synonym="CAGF29"
/gene_synonym="PAXIP1L"
/gene_synonym="PTIP"
/gene_synonym="TNRC2"
/db_xref="GeneID:22976"
/db_xref="MIM:608254"
CDS <1..1177
/gene="PAXIP1"
/gene_synonym="CAGF28"
/gene_synonym="CAGF29"
/gene_synonym="PAXIP1L"
/gene_synonym="PTIP"
/gene_synonym="TNRC2"
/codon_start=2
/product="PAXIP1 protein"
/protein_id="AAH08328.1"
/db_xref="GeneID:22976"
/db_xref="MIM:608254"
/translation="TVLKKKKMVPPHRALHFPVAFPPGGKPCSQHIISVTGFVDSDRD
DLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQWLGDILLGNF
EALRQIQYSRYTAFSLQDPFAPTQHLVLNLLDAWRVPLKVSAELLMSIRLPPKLKQNE
VANVQPSSKRARIEDVPPPTKKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAES
AQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEV
LFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKL
MEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKFN"
BASE COUNT 439 a 322 c 339 g 418 t
ORIGIN
1 cacagtctta aagaagaaga aaatggtacc gccgcaccga gcccttcact tcccagtggc
61 cttcccacca ggaggaaagc catgttcaca gcatattatt tctgtgactg gatttgttga
121 tagtgacaga gatgacctaa aattaatggc ttatttggca ggtgccaaat atacgggtta
181 tctatgccgc agcaacacag tcctcatctg taaagaacca actggtttaa agtatgaaaa
241 agccaaagag tggaggatac cctgtgtcaa cgcccagtgg cttggcgaca ttcttctggg
301 aaactttgag gcactgaggc agattcagta tagtcgctac acggcattca gtctgcagga
361 tccatttgcc cctacccagc atttagtttt aaatctttta gatgcttgga gagttccctt
421 aaaagtgtct gcagagttgt tgatgagtat aagactacct cccaaactga aacagaatga
481 agtagctaat gtccagcctt cttccaaaag agccagaatt gaagacgtac cacctcccac
541 taaaaagcta actccagaat tgaccccttt tgtgcttttc actggattcg agcctgtcca
601 ggttcaacag tatattaaga agctctacat tcttggtgga gaggttgcgg agtctgcaca
661 gaagtgcaca cacctcattg ccagcaaagt gactcgcacc gtgaagttcc tgacggcgat
721 ttctgtcgtg aagcacatag tgacgccaga gtggctggaa gaatgcttca ggtgtcagaa
781 gttcattgat gagcagaact acattctccg agatgctgag gcagaagtac ttttctcttt
841 cagcttggaa gaatccttaa aacgggcaca cgtttctcca ctctttaagg caaaatattt
901 ttacatcaca cctggaatct gcccaagtct ttccactatg aaggcaatcg tagagtgtgc
961 aggaggaaag gtgttatcca agcagccatc tttccggaag ctcatggagc acaagcagaa
1021 ctcgagtttg tcggaaataa ttttaatatc ctgtgaaaat gaccttcatt tatgccgaga
1081 atattttgcc agaggcatag atgttcacaa tgcagagttc gttctgactg gagtgctcac
1141 tcaaacgctg gactatgaat catataagtt taactgatgg cgtctaggct gccgtgcatg
1201 tcgactcctg cggtgcgggg ctggctgtct ggctggcgag gagctgctgc gcttccttca
1261 catgctcttg ttttccagct gctttcctgg gggatcagac tgtgaagcag gaagacagat
1321 ataataaata tactgcatct ttttaagatg tgcaatttta ttctgaggaa acataaatta
1381 tgttttgtat tatatgactt taagagccca cattaggttt tatgattcat ttgccaggtt
1441 tttaaatgtt ttcacaaaac tgttacggga cttcaactag aaataaaatg gtgtaaataa
1501 aaaaaaaaaa aaaaaaaa
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