LOCUS BC008327 3649 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens Smith-Magenis syndrome chromosome region, candidate
7-like, mRNA (cDNA clone MGC:15774 IMAGE:3502711), complete cds.
ACCESSION BC008327
VERSION BC008327.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3649)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3649)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 23 Row: b Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42766427.
FEATURES Location/Qualifiers
source 1..3649
/db_xref="H-InvDB:HIT000033726"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15774 IMAGE:3502711"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3649
/gene="SMCR7L"
/gene_synonym="dJ1104E15.3"
/gene_synonym="FLJ20232"
/gene_synonym="HSU79252"
/db_xref="GeneID:54471"
/db_xref="HGNC:HGNC:25979"
CDS 402..1793
/gene="SMCR7L"
/gene_synonym="dJ1104E15.3"
/gene_synonym="FLJ20232"
/gene_synonym="HSU79252"
/codon_start=1
/product="Smith-Magenis syndrome chromosome region,
candidate 7-like"
/protein_id="AAH08327.1"
/db_xref="GeneID:54471"
/db_xref="HGNC:HGNC:25979"
/translation="MAGAGERKGKKDDNGIGTAIDFVLSNARLVLGVGGAAMLGIATL
AVKRMYDRAISAPTSPTRLSHSGKRSWEEPNWMGSPRLLNRDMKTGLSRSLQTLPTDS
STFDTDTFCPPRPKPVARKGQVDLKKSRLRMSLQEKLLTYYRNRAAIPAGEQARAKQA
AVDICAELRSFLRAKLPDMPLRDMYLSGSLYDDLQVVTADHIQLIVPLVLEQNLWSCI
PGEDTIMNVPGFFLVRRENPEYFPRGSSYWDRCVVGGYLSPKTVADTFEKVVAGSINW
PAIGSLLDYVIRPAPPPEALTLEVQYERDKHLFIDFLPSVTLGDTVLVAKPHRLAQYD
NLWRLSLRPAETARLRALDQADSGCRSLCLKILKAICKSTPALGHLTASQLTNVILHL
AQEEADWSPDMLADRFLQALRGLISYLEAGVLPSALNPKVNLFAELTPEEIDELGYTL
YCSLSEPEVLLQT"
BASE COUNT 798 a 954 c 970 g 927 t
ORIGIN
1 cccggggaga ggtacccggc cagaggcgag tcctgcggag tggtagcgcg cacggcctgc
61 ggtgtgacac ccagcccctg ccagtccccc atggccccgt ggagccgaga ggcggtgctg
121 agtctctatc gggctctgtt gcgccagggc cgacagcttc gctacactga tcgagacttc
181 tactttgcct ccatccgccg tgaattccga aaaaatcaga agctagagga cgctgaggcc
241 cgggagaggc agctggagaa gggcctggtc tttctcaacg gcaaattggg gaggatcatt
301 taggatcctc caagggaaag aggacaaagg tgccttctgt agacactcct gctctcttcc
361 atccccatct tacagatgta ttaagaagcc tcagatgagc aatggcaggc gctggtgagc
421 gcaaaggcaa gaaggatgac aatggcattg gcacggccat tgactttgtg ctctccaatg
481 cccggctggt gctgggggtg ggtggagcgg ccatgctggg catcgccacg ctggcagtta
541 agcggatgta cgatcgggcg atcagtgccc ctaccagccc cacccgcctg agccattcgg
601 ggaaaaggag ctgggaagaa cccaactgga tgggctcccc acgactgctg aacagggaca
661 tgaagacggg cctgagccgg tccttgcaga cccttcccac agactcctcc accttcgaca
721 cagatacatt ctgcccgccc cggcccaagc cagtggccag gaagggccag gtagacttga
781 agaagtcacg actccgcatg tccctgcagg agaaacttct tacttactac cggaaccggg
841 cagccatccc tgctggagag caggctcggg ccaagcaagc tgctgtggac atatgtgccg
901 agctccggag cttcctgcgg gccaagttgc ctgacatgcc gcttcgggac atgtacttga
961 gtggcagcct ctacgatgac ctgcaggtgg tgacagctga ccacatccaa ctcattgtgc
1021 cccttgtgct ggagcagaac ctgtggtcat gtattcctgg tgaagacacc atcatgaatg
1081 tccctggctt cttcctggtg cgtcgtgaga atccagagta ctttcctcgt gggagcagtt
1141 actgggaccg ctgtgtagta gggggctacc tctctccaaa gacagtcgca gatacatttg
1201 agaaggtagt ggctggctcc atcaattggc cagccatagg gtccctcttg gactatgtga
1261 tccgcccggc cccaccccca gaagccctca cactggaggt gcagtatgag cgtgacaaac
1321 atctcttcat tgacttcctg ccatcagtga ccctcggtga cacagtcttg gtggccaaac
1381 cacaccggct agcccagtat gacaacctgt ggcggctgag cctgcgtccc gcggagacgg
1441 cacgcctgcg ggctctggac caggctgact cgggctgccg atctctgtgc ctcaagatcc
1501 tcaaggccat atgcaagtcc accccggctc tgggccacct cactgccagc cagctaacca
1561 atgtcatcct ccacttggcc caggaggagg ctgactggtc tccggatatg ctggccgacc
1621 gtttcctgca ggccttgagg ggacttatca gctacttaga ggctggagtc ctgcccagtg
1681 ccctaaaccc caaggtgaac ttatttgcag agctcacccc tgaagaaata gacgaattag
1741 gatacactct gtattgctca ttgtctgagc cagaggtgct gctgcagacg tagggcaggt
1801 gaaggccaaa gcgggtgttg gtggtcaggc cctggattct ccgttagata cacttggcta
1861 cctagttggt gcctcacagg gttcctgctg cctggtgtct tgctgatcat caccctggtc
1921 acttcatgct gattagaatg acatctcttt cgtctcctat tttgttaccc aactcttcct
1981 atttttgtta ccaatcactg tgctctctgc cgccccctgg ctccaggcta atttttttgg
2041 aatgaattga gaaggtggcg tgctggcctg agctgatgga ccacttggtg ttttgcgttt
2101 tggcccatgt ttgctgcctc tatctggtct gccttgcccg tttgcctgtt cctattcagt
2161 gtcttttcta ttttttcctc tctcgttcat gccttctgtt ttgctcttgt ccctggagca
2221 tatctgccta attaagatgt tgccttttag ttgaatgcca ctgaagagct gtgatagcat
2281 gtttcaaagc tgaactctac agagcgagtg ctgagacagt atttagggtt tctgggagtg
2341 aggctggtag aagagttggc ctttgaccac ggttcctgga gtagaagtcc atcctccccc
2401 caacctcctg acccattcat aaatgctgag aatgtctctc atgggaacac tgttaatgac
2461 ccacacagga taagctgaat gcaaagttat ttgcaggttg aatttcttgg tggctattag
2521 cagaagtgca gagtagggaa ccagagctgg ttaagggcct agtgaagggt ttgtgtgccc
2581 agtgtctgct cgtcatctgt ggctgcaggg gtcagacaga caaggatggg gactgccagg
2641 gcaccacttc atcatgaatg ctggttttca caccttttcc ttattttatt gccaatcagg
2701 acaaggcctt gaaggaacgc agccttagac atcaggtgag gatgatggag gtagacagtc
2761 gactgaatgt cagctggaaa atccagtcac tagttggggt ttggtggcca tgttttctac
2821 ccagacaggc cctgcttttc taggatgtgg ccttagagca agaacagacc caacagccag
2881 cccttcatcc tccagcgtct gccataggaa tgtgagaggg gtgtttgctg agcgctccgg
2941 gcacggccag agggcaagtg agcatgcacg gacctcttcc ccctgtcctg tttctcaccc
3001 agcacctggg gagatcggtg ctaccaagga agagagcaca cagataagac agaggggagg
3061 aggtgggcat ttcctacatt cctccttgtt tgccgctgct gagattgcag tatttattgc
3121 aatgtaaatg tatcctgaag gtggggagga atgtttaatc taccatgtcc gtgtgtcatc
3181 ttggtttgtg tttttccctg tttgtagcaa gactctgatg ataattctgt ttctcatctg
3241 cccattcagt attttgtttt ccttccgtca agttgtctta ttttttcaat gactacctct
3301 ccatcattga ggttctggtg aagctctctg cagctgtctc attccttccc aacgatagta
3361 acaggaaatg actctttagc atcgatacct caacatcaat ttagggtaga gattcctgcc
3421 cctcttttgt cacagattag gaaattgaga actagggtta accttgacta tatttagagg
3481 tctttttgcc tcttttcccc ttaacaagga tttcttatgg tggtttcagt ttcatttgca
3541 taaaggtatt gagagggaac aaaaaacata aagctgagaa tcttgagaga gctcatctac
3601 cctgtctgtt ggtcagactc aaatgagagt taaaaaaaaa aaaaaaaaa
//