LOCUS BC007950 2927 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold
attachment factor A), mRNA (cDNA clone IMAGE:4299389), partial cds.
ACCESSION BC007950
VERSION BC007950.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2927)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2927)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007950.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: l Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..2927
/db_xref="H-InvDB:HIT000086963"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4299389"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2927
/gene="HNRPU"
/gene_synonym="HNRNPU"
/gene_synonym="SAF-A"
/gene_synonym="U21.1"
/db_xref="GeneID:3192"
/db_xref="MIM:602869"
CDS <1..2120
/gene="HNRPU"
/gene_synonym="HNRNPU"
/gene_synonym="SAF-A"
/gene_synonym="U21.1"
/codon_start=3
/product="HNRPU protein"
/protein_id="AAH07950.2"
/db_xref="GeneID:3192"
/db_xref="MIM:602869"
/translation="DQMELGEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDEL
GDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGA
RQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEED
EHFDDTVVCLDTYNCDLHFKISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEM
KVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGMLLGEEEFSYGYSLKGIKTCNCETEDY
GEKFDENDVITCFANFESDEVELSYAKNGQDLGVAFKISKEVLAGRPLFPHVLCHNCA
VEFNFGQKEKPYFPIPEEYTFIQNVPLEDRVRGPKGPEEKKDCEVVMMIGLPGAGKTT
WVTKHAAENPGKYNILGTNTIMDKMMVAGFKKQMADTGKLNTLLQRAPQCLGKFIEIA
ARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKVVVVCPKDEDYKQRTQKKAEVEGKDL
PEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTG
SKKSNKNKSGKNQFNRGGGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRGGGGG
GSGGIGYPYPRAPVFPGRGSYSNRGNYNRGGMPNRGNYNQNFRGRGNNRGYKNQSQGY
NQWQQGQFWGQKPWSQHYHQGYY"
misc_feature 681..1031
/gene="HNRPU"
/gene_synonym="HNRNPU"
/gene_synonym="SAF-A"
/gene_synonym="U21.1"
/note="SPRY; Region: SPRY domain. SPRY Domain is named
from SPla and the RYanodine Receptor. Domain of unknown
function. Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues"
/db_xref="CDD:pfam00622"
BASE COUNT 931 a 521 c 756 g 719 t
ORIGIN
1 gcgaccagat ggagctagga gaggagaacg gggccgcggg ggcggccgac tcgggcccga
61 tggaggagga ggaggccgcc tcggaagacg agaacggcga cgatcagggt ttccaggaag
121 gggaagatga gctcggggac gaagaggaag gcgcgggcga cgagaacggg cacggggagc
181 agcagcctca accgccggcg acgcagcagc aacagcccca acagcagcgc ggggccgcca
241 aggaggccgc gggtaagagc agcggcccca cctcgctgtt cgcggtgacg gtggcgccgc
301 ccggggcgag gcagggccag cagcaggcgg gaggggacgg caaaacagaa cagaaaggcg
361 gagataaaaa gaggggtgtt aaaagaccac gagaagatca tggccgtgga tattttgagt
421 acattgaaga gaacaagtat agcagagcca aatctcctca gccacctgtt gaagaagaag
481 atgaacactt cgatgacaca gtggtttgtc ttgatactta taattgtgat ctacatttta
541 aaatatcaag agatcgtctc agtgcttctt cccttacaat ggagagtttt gcttttcttt
601 gggctggagg aagagcatcc tatggtgtgt caaaaggcaa agtgtgtttt gagatgaagg
661 ttacagagaa gatcccagta aggcatttat atacaaaaga tattgacata catgaagttc
721 gtattggctg gtcactaact acaagtggaa tgttacttgg tgaagaagaa ttttcttatg
781 ggtattctct aaaaggaata aaaacatgca actgtgagac tgaagattat ggagaaaagt
841 ttgatgaaaa tgatgtgatt acatgttttg ctaactttga aagtgatgaa gtagaactct
901 cgtatgctaa gaatggacaa gatcttggcg ttgccttcaa aatcagtaag gaagttcttg
961 ctggacggcc actgttcccg catgttctct gccacaactg tgcagttgaa tttaattttg
1021 gtcagaagga aaagccatat tttccaatac ctgaagagta tactttcatc cagaacgtcc
1081 ccttagagga tcgagttaga ggaccaaagg ggcctgaaga gaagaaagat tgtgaagttg
1141 tgatgatgat tggcttgcca ggagctggaa aaactacctg ggttactaaa catgcagcag
1201 aaaatccagg gaaatataac attcttggca caaatactat tatggataag atgatggtgg
1261 caggttttaa gaagcaaatg gcagatactg gaaaactgaa cacactgttg cagagagccc
1321 cccagtgtct tgggaaattt attgagattg ctgcccgaaa gaagcgaaat tttattctgg
1381 atcagacaaa tgtgtctgct gctgcccaga ggagaaaaat gtgcctgttt gcaggcttcc
1441 agcgaaaagt tgttgtagtt tgcccaaaag atgaagacta taagcaaaga acacagaaga
1501 aagcagaagt agaggggaaa gacctaccag aacatgcggt cctcaaaatg aaaggaaact
1561 ttaccctccc agaggtagct gagtgctttg atgaaataac ctatgttgaa cttcagaagg
1621 aagaagccca aaaactcttg gagcaatata aggaagaaag caaaaaggct cttccaccag
1681 aaaagaaaca gaacactggc tcaaagaaaa gcaataaaaa taagagtggc aagaaccagt
1741 ttaacagagg tggtggccat agaggacgtg gaggattcaa tatgcgtggt ggaaatttca
1801 gaggaggagc ccctgggaat cgtggcggat ataataggag gggcaacatg ccacagagag
1861 gtggtggcgg tggaggaagt ggtggaatcg gctatccata ccctcgtgcc cctgtttttc
1921 ctggccgtgg tagttactca aacagaggga actacaacag aggtggaatg cccaacagag
1981 ggaactacaa ccagaacttc agaggacgag gaaacaatcg tggctacaaa aatcaatctc
2041 agggctacaa ccagtggcag cagggtcaat tctggggtca gaagccatgg agtcagcatt
2101 atcaccaagg atattattga atacccaaat aaaacgaact gatacatatt tctccaaaac
2161 cttcacaaga agtcgactgt tttctttagt aggctaactt tttaaacatt ccacaagagg
2221 aagtgcctgc gggttccttt tttagaagct ttgtgggttg attttttttc ttttcttttt
2281 tgtacatttt taattgcagt ttaaaagtga atcgtaagag aacctcagca ttgtgcacga
2341 taagagaatg tgtcagtatt tcagggttct acattttatc tgtaaaatgt gacttttttt
2401 tttttttatc acaacagaag taaaatgttg ctttgtacct ggtgtctttt attaagaatt
2461 tactcccccc atttctcaca gagaataaca gtcgggagtc attgtcacaa tataatagaa
2521 atgttagcaa ccagattcat gtaaggacta agtggtcctc atgaattgca ttaagactct
2581 gtactgctca tattacactc catcctctct gtagtttgct gggtagtgga gggggtaagc
2641 taaatcatag tttctgacaa taactgggaa ggttttttct taaaataaca atggaattgg
2701 tataattggg attgaaaact aaaacttgga actaagatag agaagatgga gtgtatgtag
2761 aagggctgtt aaaaatgtaa aacttggttg cattatttgt ggaggctcaa acttgtgaag
2821 gttaatacca taatttttcc atttgttctg cattttgatt ctgaaaagaa agctggcttt
2881 gcccatttct tattaaaaaa acttgttgta aaaaaaaaaa aaaaaaa
//