LOCUS BC007886 2052 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 39 (zinc transporter), member 1,
mRNA (cDNA clone MGC:14180 IMAGE:4122086), complete cds.
ACCESSION BC007886
VERSION BC007886.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2052)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2052)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007886.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: d Column: 17.
FEATURES Location/Qualifiers
source 1..2052
/db_xref="H-InvDB:HIT000033513"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14180 IMAGE:4122086"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2052
/gene="SLC39A1"
/gene_synonym="ZIP1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
CDS 59..1033
/gene="SLC39A1"
/gene_synonym="ZIP1"
/codon_start=1
/product="solute carrier family 39 (zinc transporter),
member 1"
/protein_id="AAH07886.1"
/db_xref="GeneID:27173"
/db_xref="HGNC:HGNC:12876"
/db_xref="MIM:604740"
/translation="MGPWGEPELLVWRPEAVASEPPVPVGLEVKLGALVLLLVLTLLC
SLVPICVLRRPGANHEGSASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAA
LHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPSPLEETRALLGTVNGGPQHWH
DGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHK
GILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLE
GMAAGTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQI"
BASE COUNT 433 a 550 c 596 g 473 t
ORIGIN
1 agaccatgta gtgagaccct cgcgaggtct gagagtcact ggagctacca gaagcatcat
61 ggggccctgg ggagagccag agctcctggt gtggcgcccc gaggcggtag cttcagagcc
121 tccagtgcct gtggggctgg aggtgaagtt gggggccctg gtgctgctgc tggtgctcac
181 cctcctctgc agcctggtgc ccatctgtgt gctgcgccgg ccaggagcta accatgaagg
241 ctcagcttcc cgccagaaag ccctgagcct agtaagctgt ttcgcggggg gcgtcttttt
301 ggccacttgt ctcctggacc tgctgcctga ctacctggct gccatagatg aggccctggc
361 agccttgcac gtgacgctcc agttcccact gcaagagttc atcctggcca tgggcttctt
421 cctggtcctg gtgatggagc agatcacact ggcttacaag gagcagtcag ggccgtcacc
481 tctggaggaa acaagggctc tgctgggaac agtgaatggt gggccgcagc attggcatga
541 tgggccaggg gtcccacagg cgagtggagc cccagcaacc ccctcagcct tgcgtgcctg
601 tgtactggtg ttctccctgg ccctccactc cgtgttcgag gggctggcgg tagggctgca
661 gcgagaccgg gctcgggcca tggagctgtg cctggctttg ctgctccaca agggcatcct
721 ggctgtcagc ctgtccctgc ggctgttgca gagccacctt agggcacagg tggtggctgg
781 ctgtgggatc ctcttctcat gcatgacacc tctaggcatc gggctgggtg cagctctggc
841 agagtcggca ggacctctgc accagctggc ccagtctgtg ctagagggca tggcagctgg
901 cacctttctc tatatcacct ttctggaaat cctgccccag gagctggcca gttctgagca
961 aaggatcctc aaggtcattc tgctcctagc aggctttgcc ctgctcactg gcctgctctt
1021 catccaaatc tagggggctt caagagaggg gcaggggaga ttgatgatca ggtgcccctg
1081 ttctcccttc cctcccccag ttgtggggaa taggaaggaa aggggaaggg aaatactgag
1141 gaccaaaaag ttctctggga gctaaagata gagcctttgg ggctatctga ctaatgagag
1201 ggaagtgggc agacaagagg ctggccccag tcccaaggaa caagagatgg tcaagtcgct
1261 agagacatat caggggacat taggattggg gaagacactt gactgctaga atcagaggtt
1321 ggacactata cataaggaca ggctcacatg ggaggctgga ggtgggtacc cagctgctgt
1381 ggaacgggta tggacaggtc ataaacctag agtcagtgtc ctgttggtcc tagcccattt
1441 cagcaccctg ccacttggag tggacccctc ctactcttct tagcgcctac cctcatacct
1501 atctccctcc tcccatctcc taggggactg gcgccaaatg gtctctccct gccaattttg
1561 gtatcttctc tggcctctcc agtcctgctt actcctctat ttttaaagtg ccaaacaaat
1621 ccccttcctc tttctcaaag cacagtaatg tggcactgag ccctacccag cacctcagtg
1681 aagggggcct gcttgctctt tattttggtc ccggatcctg gggtggggca gaaatatttt
1741 ctgggctggg gtaggaggaa ggttgttgca gccatctact gctgctgtac cctaggaata
1801 tggggacatg gacatggtgt cccatgccca gatgataaac actgagctgc caaaacattt
1861 ttttaaatac acccgaggag cccaaggggg aagggcaatg cctaccccca gcgttatttt
1921 tggggaggga gggctgtgca tagggacata ttctttagaa tctattttat taactgacct
1981 gttttgggac ctgttaccca aataaaagat gtttctagac atctgtacaa aaaaaaaaaa
2041 aaaaaaaaaa aa
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