LOCUS BC007810 1278 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens calpain 3, (p94), mRNA (cDNA clone IMAGE:4298617),
complete cds.
ACCESSION BC007810
VERSION BC007810.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1278)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1278)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 26, 2003 this sequence version replaced BC007810.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: k Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 27765079
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1278
/db_xref="H-InvDB:HIT000033460"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4298617"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1278
/gene="CAPN3"
/gene_synonym="CANP3"
/gene_synonym="CANPL3"
/gene_synonym="nCL-1"
/gene_synonym="p94"
/db_xref="GeneID:825"
/db_xref="HGNC:HGNC:1480"
/db_xref="MIM:114240"
CDS 225..695
/gene="CAPN3"
/gene_synonym="CANP3"
/gene_synonym="CANPL3"
/gene_synonym="nCL-1"
/gene_synonym="p94"
/codon_start=1
/product="calpain 3, (p94)"
/protein_id="AAH07810.3"
/db_xref="GeneID:825"
/db_xref="HGNC:HGNC:1480"
/db_xref="MIM:114240"
/translation="MEICADELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDGS
GKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIIT
MRYADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA"
BASE COUNT 370 a 327 c 295 g 286 t
ORIGIN
1 cacaggcgat tggttttagt ggtaggtgtg tggggatctg ttctggtcat ctggatgctg
61 gtcatcggtg tgcagtattg atcaggacct gcaaacccaa aagcttatgg gagctggcac
121 gtcacaaaaa gaaaaaaacc aagccacagc ctggcagctc tgatcaggaa agtgaggaac
181 agcaacaatt ccggaacatt ttcaagcaga tagcaggaga tgacatggag atctgtgcag
241 atgagctcaa gaaggtcctt aacacagtcg tgaacaaaca caaggacctg aagacacacg
301 ggttcacact ggagtcctgc cgtagcatga ttgcgctcat ggatacagat ggctctggaa
361 agctcaacct gcaggagttc caccacctct ggaacaagat taaggcctgg cagaaaattt
421 tcaaacacta tgacacagac cagtccggca ccatcaacag ctacgagatg cgaaatgcag
481 tcaacgacgc aggattccac ctcaacaacc agctctatga catcattacc atgcggtacg
541 cagacaaaca catgaacatc gactttgaca gtttcatctg ctgcttcgtt aggctggagg
601 gcatgttcag agcttttcat gcatttgaca aggatggaga tggtatcatc aagctcaacg
661 ttctggagtg gctgcagctc accatgtatg cctgaaccag gctggcctca tccaaagcca
721 tgcaggatca ctcaggattt cagtttcacc ctctattttc aaagccattt acctcaaagg
781 acccagcagc tacaccccta caggcttcca ggcacctcat cagtcatgtt cctcctccat
841 tttaccccct acccatcctt gatcggtcat gcctagcctg accctttagt aaagcaatga
901 ggtaggaaga acaaaccctt gtccctttgc catgtggagg aaagtgcctg cctctggtcc
961 gagccgcctc ggttctgaag cgagtgctcc tgcttacctt gctctaggct gtctgcagaa
1021 gcacctgccg gtggcactca gcacctcctt gtgctagagc cctccatcac cttcacgctg
1081 tcccaccatg ggccaggaac caaaccagca ctgggttcta ctgctgtggg gtaaactaac
1141 tcagtggaat agggctggtt actttgggct gtccaactca taagtttggc tgcattttga
1201 aaaaagctga tctaaataaa ggcatgtgta tggctggaaa aaaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaa
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