LOCUS BC007667 2181 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, non-receptor type 6,
mRNA (cDNA clone MGC:2331 IMAGE:3138804), complete cds.
ACCESSION BC007667
VERSION BC007667.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2181)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2181)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007667.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 4 Row: j Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34328901.
FEATURES Location/Qualifiers
source 1..2181
/db_xref="H-InvDB:HIT000033366"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2331 IMAGE:3138804"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2181
/gene="PTPN6"
/gene_synonym="HCP"
/gene_synonym="HCPH"
/gene_synonym="HPTP1C"
/gene_synonym="PTP-1C"
/gene_synonym="SH-PTP1"
/gene_synonym="SHP-1"
/gene_synonym="SHP-1L"
/gene_synonym="SHP1"
/db_xref="GeneID:5777"
/db_xref="HGNC:HGNC:9658"
/db_xref="MIM:176883"
CDS 136..1929
/gene="PTPN6"
/gene_synonym="HCP"
/gene_synonym="HCPH"
/gene_synonym="HPTP1C"
/gene_synonym="PTP-1C"
/gene_synonym="SH-PTP1"
/gene_synonym="SHP-1"
/gene_synonym="SHP-1L"
/gene_synonym="SHP1"
/codon_start=1
/product="protein tyrosine phosphatase, non-receptor type
6"
/protein_id="AAH07667.1"
/db_xref="GeneID:5777"
/db_xref="HGNC:HGNC:9658"
/db_xref="MIM:176883"
/translation="MLSRGWFHRDLSGLDAETLLKGRGVHGSFLARPSRKNQGDFSLS
VRVGDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL
NCSDPTSERWYHGHMSGGQAETLLQAKGEPWTFLVRESLSQPGDFVLSVLSDQPKAGP
GSPLRVTHIKVMCEGGRYTVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYAT
RVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKN
RYKNILPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCLEATV
NDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWPEVGMQRAYGPYSVTNCGEHDTTEY
KLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGP
IIVHCSAGIGRTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYK
FIYVAIAQFIETTKKKLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVY
ENLHTKNKREEKVKKQRSADKEKSKGSLKRK"
BASE COUNT 532 a 621 c 638 g 390 t
ORIGIN
1 caggatcgag gaggaagtgg ctgattactg agcggttctt cctcacctgg cttgggccac
61 tgtgcacagc tgtgccgctg gctcagcccc gccccctgcg gccctccgcc gtggcttccc
121 cctccctaca gagagatgct gtcccgtggg tggtttcacc gagacctcag tgggctggat
181 gcagagaccc tgctcaaggg ccgaggtgtc cacggtagct tcctggctcg gcccagtcgc
241 aagaaccagg gtgacttctc gctctccgtc agggtggggg atcaggtgac ccatattcgg
301 atccagaact caggggattt ctatgacctg tatggagggg agaagtttgc gactctgaca
361 gagctggtgg agtactacac tcagcagcag ggtgtcctgc aggaccgcga cggcaccatc
421 atccacctca agtacccgct gaactgctcc gatcccacta gtgagaggtg gtaccatggc
481 cacatgtctg gcgggcaggc agagacgctg ctgcaggcca agggcgagcc ctggacgttt
541 cttgtgcgtg agagcctcag ccagcctgga gacttcgtgc tttctgtgct cagtgaccag
601 cccaaggctg gcccaggctc cccgctcagg gtcacccaca tcaaggtcat gtgcgagggt
661 ggacgctaca cagtgggtgg tttggagacc ttcgacagcc tcacggacct ggtggagcat
721 ttcaagaaga cggggattga ggaggcctca ggcgcctttg tctacctgcg gcagccgtac
781 tatgccacga gggtgaatgc ggctgacatt gagaaccgag tgttggaact gaacaagaag
841 caggagtccg aggatacagc caaggctggc ttctgggagg agtttgagag tttgcagaag
901 caggaggtga agaacttgca ccagcgtctg gaagggcagc ggccagagaa caagggcaag
961 aaccgctaca agaacattct cccctttgac cacagccgag tgatcctgca gggacgggac
1021 agtaacatcc ccgggtccga ctacatcaat gccaactaca tcaagaacca gctgctaggc
1081 cctgatgaga acgctaagac ctacatcgcc agccagggct gtctggaggc cacggtcaat
1141 gacttctggc agatggcgtg gcaggagaac agccgtgtca tcgtcatgac cacccgagag
1201 gtggagaaag gccggaacaa atgcgtccca tactggcccg aggtgggcat gcagcgtgct
1261 tatgggccct actctgtgac caactgcggg gagcatgaca caaccgaata caaactccgt
1321 accttacagg tctccccgct ggacaatgga gacctgattc gggagatctg gcattaccag
1381 tacctgagct ggcccgacca tggggtcccc agtgagcctg ggggtgtcct cagcttcctg
1441 gaccagatca accagcggca ggaaagtctg cctcacgcag ggcccatcat cgtgcactgc
1501 agcgccggca tcggccgcac aggcaccatc attgtcatcg acatgctcat ggagaacatc
1561 tccaccaagg gcctggactg tgacattgac atccagaaga ccatccagat ggtgcgggcg
1621 cagcgctcgg gcatggtgca gacggaggcg cagtacaagt tcatctacgt ggccatcgcc
1681 cagttcattg aaaccactaa gaagaagctg gaggtcctgc agtcgcagaa gggccaggag
1741 tcggagtacg ggaacatcac ctatccccca gccatgaaga atgcccatgc caaggcctcc
1801 cgcacctcgt ccaaacacaa ggaggatgtg tatgagaacc tgcacactaa gaacaagagg
1861 gaggagaaag tgaagaagca gcggtcagca gacaaggaga agagcaaggg ttccctcaag
1921 aggaagtgag cggtgctgtc ctcaggtggc catgcctcag ccctgaccct gtggaagcat
1981 ttcgcgatgg acagactcac aacctgaacc taggagtgcc ccattctttt gtaatttaaa
2041 tggctgcatc ccccccacct ctccctgacc ctgtatatag cccagccagg ccccaggcag
2101 ggccaaccct tctcctcttg taaataaagc cctgggatcc ctgtgaaaaa aaaaaaaaaa
2161 aaaaaaaaaa aaaaaaaaaa a
//