LOCUS BC007654 1431 bp mRNA linear HUM 08-OCT-2003
DEFINITION Homo sapiens NIF3 NGG1 interacting factor 3-like 1 (S. pombe), mRNA
(cDNA clone MGC:2595 IMAGE:3346099), complete cds.
ACCESSION BC007654
VERSION BC007654.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1431)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1431)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC007654.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11141898.
FEATURES Location/Qualifiers
source 1..1431
/db_xref="H-InvDB:HIT000033355"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2595 IMAGE:3346099"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1431
/gene="NIF3L1"
/gene_synonym="ALS2CR1"
/gene_synonym="CALS-7"
/gene_synonym="MDS015"
/db_xref="GeneID:60491"
/db_xref="MIM:605778"
CDS 28..1161
/gene="NIF3L1"
/gene_synonym="ALS2CR1"
/gene_synonym="CALS-7"
/gene_synonym="MDS015"
/codon_start=1
/product="NIF3L1 protein"
/protein_id="AAH07654.1"
/db_xref="GeneID:60491"
/db_xref="MIM:605778"
/translation="MLSSCVRPVPTTVRFVDSLICNSSRSFMDLKALLSSLNDFASLS
FAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKR
ITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPN
YPTEGNHRVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKAL
MQVVDFLSRNKQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLS
HIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDAASQGINV
ILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV"
misc_feature 109..465
/gene="NIF3L1"
/gene_synonym="ALS2CR1"
/gene_synonym="CALS-7"
/gene_synonym="MDS015"
/note="COG0327; Region: Uncharacterized conserved protein
[Function unknown]"
/db_xref="CDD:COG0327"
misc_feature 691..1122
/gene="NIF3L1"
/gene_synonym="ALS2CR1"
/gene_synonym="CALS-7"
/gene_synonym="MDS015"
/note="COG0327; Region: Uncharacterized conserved protein
[Function unknown]"
/db_xref="CDD:COG0327"
BASE COUNT 405 a 327 c 308 g 391 t
ORIGIN
1 gaaacttgaa ctttacctga tttctgtatg ttgtcatctt gcgtacgccc agtccccacg
61 acagtccggt ttgtagattc cctgatctgc aattcttccc gttccttcat ggatttgaag
121 gctctccttt cttccttgaa tgactttgca tccctctcgt ttgctgagag ttgggacaat
181 gttggattac tggtggaacc aagcccacca catactgtaa atacactctt cctgaccaat
241 gacctgactg aggaagtgat ggaggaggtg ctgcaaaaga aggcagacct cattctctcc
301 taccatccgc ctatcttccg acccatgaag cgcataacct ggaacacatg gaaggagcgc
361 ctggtgatcc gggctctgga gaacagagtc ggtatctact ctcctcatac agcctatgat
421 gctgcgcccc agggcgtcaa caactggttg gctaaagggc ttggagcttg tacctccagg
481 cccatacatc cttccaaagc tcccaactac cctacagagg gaaaccaccg agtagaattc
541 aacgttaact acacccaaga cctggacaaa gtcatgtctg cagtgaaagg aattgacggt
601 gtttctgtca cttctttttc tgctaggact ggtaatgagg aacaaacacg gattaatctg
661 aattgtactc agaaggcttt gatgcaggtg gtagattttc tttcccggaa caaacaactt
721 tatcagaaga cggaaattct gtcactggag aagcctttgc ttctacatac tggaatggga
781 cggttatgca cactggatga atctgtctcc ctggcaacca tgattgatcg aataaaaaga
841 cacctaaaac tatctcatat tcgcttagcc cttggggtgg ggagaacctt agagtctcaa
901 gtcaaagtcg tggccctgtg tgctggttct gggagcagcg ttctgcaggg tgttgaggct
961 gacctttacc tcacaggtga gatgtcccat catgatactt tggatgctgc ttcccaagga
1021 ataaatgtca tcctctgtga acacagcaac actgaacgag gctttctttc tgaccttcga
1081 gatatgctgg attctcactt ggagaataag ataaatatta tcctatcaga gactgacagg
1141 gaccctcttc aggtggtata attgcagaaa catcaggata acacattcta caaatcagct
1201 ggatgccaac ttaaatttgt aacatgagtc agtgggactg gtgtgcttcc agagagtgtc
1261 ttcgagggta tcatcatttc cggtttgtta atcttattca ccaaatgttc tatcgctcgt
1321 aaggtaaaac tgtaatataa ctaccatatt aaataacaaa tgttcattat aaactctagg
1381 aaagattgaa taaaatctgt ttacttaaaa aaaaaaaaaa aaaaaaaaaa a
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