LOCUS BC007649 2643 bp mRNA linear HUM 25-NOV-2003 DEFINITION Homo sapiens agrin, mRNA (cDNA clone IMAGE:3544662), partial cds. ACCESSION BC007649 VERSION BC007649.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2643) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2643) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 23 Row: m Column: 9. FEATURES Location/Qualifiers source 1..2643 /db_xref="H-InvDB:HIT000086878" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3544662" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2643 /gene="AGRN" /gene_synonym="FLJ45064" /db_xref="GeneID:375790" /db_xref="MIM:103320" CDS <1..1468 /gene="AGRN" /gene_synonym="FLJ45064" /codon_start=2 /product="AGRN protein" /protein_id="AAH07649.1" /db_xref="GeneID:375790" /db_xref="MIM:103320" /translation="CHGGAPCQNLEAGRFHCQCPPGRVGPTCADEKSPCQPNPCHGAA PCRVLPEGGAQCECPLGREGTFCQTASGQDGSGPFLADFNGFSHLELRGLHTFARDLG EKMALEVVFLARGPSGLLLYNGQKTDGKGDFVSLALRDRRLEFRYDLGKGAAVIRSRE PVTLGAWTRVSLERNGRKGALRVGDGPRVLGESPVPHTVLNLKEPLYVGGAPDFSKLA RAAAVSSGFDGAIQLVSLGGRQLLTPEHVLRQVDVTSFAGHPCTRASGHPCLNGASCV PREAAYVCLCPGGFSGPHCEKGLVEKSAGDVDTLAFDGRTFVEYLNAVTESEKALQSN HFELSLRTEATQGLVLWSGKATERADYVALAIVDGHLQLSYNLGSQPVVLRSTVPVNT NRWLRVVAHREQREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLPELPVGPALPK AYGTGFVGCLRDVVVGRHPLHLLEDAVTKPELRPCPTP" misc_feature 2..85 /gene="AGRN" /gene_synonym="FLJ45064" /note="EGF_CA; Region: Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains" /db_xref="CDD:cd00054" misc_feature 332..727 /gene="AGRN" /gene_synonym="FLJ45064" /note="laminin_G; Region: Laminin G domain" /db_xref="CDD:pfam00054" misc_feature 791..889 /gene="AGRN" /gene_synonym="FLJ45064" /note="EGF_CA; Region: Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains" /db_xref="CDD:cd00054" misc_feature 1022..1414 /gene="AGRN" /gene_synonym="FLJ45064" /note="laminin_G; Region: Laminin G domain" /db_xref="CDD:pfam00054" BASE COUNT 458 a 848 c 847 g 490 t ORIGIN 1 ctgccatggc ggggccccat gccagaacct ggaggctgga aggttccatt gccagtgccc 61 gcccggccgc gtcggaccaa cctgtgccga tgagaagagc ccctgccagc ccaacccctg 121 ccatggggcg gcgccctgcc gtgtgctgcc cgagggtggt gctcagtgcg agtgccccct 181 ggggcgtgag ggcaccttct gccagacagc ctcggggcag gacggctctg ggcccttcct 241 ggctgacttc aacggcttct cccacctgga gctgagaggc ctgcacacct ttgcacggga 301 cctgggggag aagatggcgc tggaggtcgt gttcctggca cgaggcccca gcggcctcct 361 gctctacaac gggcagaaga cggacggcaa gggggacttc gtgtcgctgg cactgcggga 421 ccgccgcctg gagttccgct acgacctggg caagggggca gcggtcatca ggagcaggga 481 gccagtcacc ctgggagcct ggaccagggt ctcactggag cgaaacggcc gcaagggtgc 541 cctgcgtgtg ggcgacggcc cccgtgtgtt gggggagtcc ccggttccgc acaccgtcct 601 caacctgaag gagccgctct acgtaggggg cgctcccgac ttcagcaagc tggcccgtgc 661 tgctgccgtg tcctctggct tcgacggtgc catccagctg gtctccctcg gaggccgcca 721 gctgctgacc ccggagcacg tgctgcggca ggtggacgtc acgtcctttg caggtcaccc 781 ctgcacccgg gcctcaggcc acccctgcct caatggggcc tcctgcgtcc cgagggaggc 841 tgcctatgtg tgcctgtgtc ccgggggatt ctcaggaccg cactgcgaga aggggctggt 901 ggagaagtca gcgggggacg tggatacctt ggcctttgac gggcggacct ttgtcgagta 961 cctcaacgct gtgaccgaga gcgagaaggc actgcagagc aaccactttg aactgagcct 1021 gcgcactgag gccacgcagg ggctggtgct ctggagtggc aaggccacgg agcgggcaga 1081 ctatgtggca ctggccattg tggacgggca cctgcaactg agctacaacc tgggctccca 1141 gcccgtggtg ctgcgttcca ccgtgcccgt caacaccaac cgctggttgc gggtcgtggc 1201 acatagggag cagagggaag gttccctgca ggtgggcaat gaggcccctg tgaccggctc 1261 ctccccgctg ggcgccacgc agctggacac tgatggagcc ctgtggcttg ggggcctgcc 1321 ggagctgccc gtgggcccag cactgcccaa ggcctacggc acaggctttg tgggctgctt 1381 gcgggatgtg gtggtgggcc ggcacccgct gcacctgctg gaggacgccg tcaccaagcc 1441 agagctgcgg ccctgcccca ccccatgagc tggcaccaga gccccgcgcc cgctgtaatt 1501 attttctatt tttgtaaact tgttgctttt tgatatgatt ttcttgcctg agtgttggcc 1561 ggagggactg ctggcccggc ctcccttccg tccaggcagc cgtgctgcag acagacctag 1621 tgctgaggga tggacaggcg aggtggcagc gtggagggct cggcgtggat ggcagcctca 1681 ggacacacac ccctgcctca aggtgctgag cccccgcctt gcactgcgcc tgccccacgg 1741 tgtccccgcc gggaagcagc cccggctcct gaatcaccct cgctccgtca ggcgggactc 1801 gtgtcccaga gaggaagggg ctgctgaggt ctgatggggc ccttcctccg ggtgacccca 1861 cagggccttt ccaagcccct atttgagctg ctccttcctg tgtgtgctct ggaccctgcc 1921 tcggcctcct gcgccaatac tgtgacttcc aaacaatgtt actgctgggc acagctctgc 1981 gttgctcccg tgctgcctgc gccagcccca ggctgctgag gagcagaggc cagaccaggg 2041 ccgatctggg tgtcctgacc ctcagctggc cctgcccagc caccctggac atgaccgtat 2101 ccctctgcca caccccaggc cctgcgaggg gctatcgaga ggagctcact gtgggatggg 2161 gttgacctct gccgcctgcc tgggtatctg ggcctggcca tggctgtgtt cttcatgtgt 2221 tgattttatt tgacccctgg agtggtgggt ctcatctttc ccatctcgcc tgagagcggc 2281 tgagggctgc ctcactgcaa atcctcccca cagcgtcagt gaaagtcgtc cttgtctcag 2341 aatgaccagg ggccagccag tgtctgacca aggtcaaggg gcaggtgcag aggtggcagg 2401 gatggctccg aagccagaaa tgccttaaac tgcaacgtcc cgtcccttcc ccacccccat 2461 cccatcccca cccccagccc cagcccagtc ctcctaggag caggacccga tgaagcgggc 2521 ggcggtgggg ctgggtgccg tgttactaac tctagtatgt ttctgtgtca atcgctgtga 2581 aataaagtct gaaaacttta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2641 aaa //