LOCUS BC007530 2418 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens elastin microfibril interfacer 1, mRNA (cDNA clone
IMAGE:3163767), complete cds.
ACCESSION BC007530
VERSION BC007530.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2418)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2418)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: j Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5901943
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2418
/db_xref="H-InvDB:HIT000033281"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3163767"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2418
/gene="EMILIN1"
/gene_synonym="DKFZP586M121"
/gene_synonym="EMILIN"
/gene_synonym="EMILIN-1"
/gene_synonym="gp115"
/db_xref="GeneID:11117"
/db_xref="MIM:130660"
CDS 965..2008
/gene="EMILIN1"
/gene_synonym="DKFZP586M121"
/gene_synonym="EMILIN"
/gene_synonym="EMILIN-1"
/gene_synonym="gp115"
/codon_start=1
/product="EMILIN1 protein"
/protein_id="AAH07530.1"
/db_xref="GeneID:11117"
/db_xref="MIM:130660"
/translation="MADLGATKDRIISEINRLQQEATEHATESEERFRGLEEGQAQAG
QCPSLEGRLGRLEGVCERLDTVAGGLQGLREGLSRHVAGLWAGLRETNTTSQMQAALL
EKLVGGQAGLGRRLGALNSSLQLLEDRLHQLSLKDLTGEGTKGPAGEAGPPGPPGLQG
PPGPAGPPGSPGKDGQEGPIGPPGPQGEQGVEGAPAAPVPQVAFSAALSLPRSEPGTV
PFDRVLLNDGGYYDPETGVFTAPLAGRYLLSAVLTGHRHEKVEAVLSRSNQGVARVDS
GGYEPEGLENKPVAESQPSPGTLGVFSLILPLQAGDTVCVDLVMGQLAHSEEPLTIFS
GALLYGDPELEHA"
misc_feature 1562..1987
/gene="EMILIN1"
/gene_synonym="DKFZP586M121"
/gene_synonym="EMILIN"
/gene_synonym="EMILIN-1"
/gene_synonym="gp115"
/note="C1Q; Region: Complement component C1q domain.
Globular domain found in many collagens and eponymously in
complement C1q. When part of full length proteins these
domains form a 'bouquet' due to the multimerization of
heterotrimers. The C1q fold is similar to that of tumour
necrosis factor"
/db_xref="CDD:smart00110"
BASE COUNT 453 a 781 c 824 g 360 t
ORIGIN
1 gtcaggccag gcagccaagg agaagacgtg tggccggggg ctatcagaag gaaactggga
61 cggacgggcc gggctcgggc tgtcctgtgg agcagcagca tccccggggc cggcagaggc
121 gccagtggct gggcgggatg agtctctgag ggccactgtg gagcgccccg ccatggcccc
181 cgcaccctct ggagctgcta cctctgctgc ctgctgacgg cagctgcagg ggccgccagc
241 taccctcctc gaggtttcag cctctacaca ggttccagtg gggccctcag ccccgggggg
301 ccccaggccc agattgcccc ccggccagcc agccgccaca ggaactggtg tgcctacgtg
361 gtgacccgga cagtgagctg tgtccttgag gatggagtgg agacatatgt caagtaccag
421 ccttgtgcct ggggccagcc ccagtgtccc caaagcatca tgtaccgccg cttcctccgc
481 cctcgctacc gtgtggccta caagacagtg accgacatgg agtggaggtg ctgtcagggt
541 tatgggggcg atgactgtgc tgagagtccc gctccagcgc tggggcctgc gtcttccaca
601 ccacggcccc tggcccggcc tgcccgcccc aacctctctg gctccagtgc aggcagcccc
661 ctcagtggac tggggggaga aggtcctggg gagtcagaga aggtgcagca gctggaggaa
721 caggtgcaga gcctgaccaa ggagctgcaa ggcctgcggg gcgtcctgca aggactgagc
781 gggcgcctgg cagaggatgt gcagagggct gtggagacgg ccttcaacgg gaggcagcag
841 ccagctgacg cggctgcccg ccctggggtg catgaaaccc tcaatgagat ccagcaccag
901 ctgcagctcc tggacacccg cgtctccacc cacgaccagg agctgggtca cctcaacaac
961 catcatggct gacctggggg caaccaagga ccgtatcatt tctgagatta acaggctgca
1021 gcaggaggcc acagagcatg ctacagagag tgaagagcgc ttccgaggcc tagaggaggg
1081 acaagcacag gccggccagt gccccagctt agaggggcga ttgggccgtc ttgagggtgt
1141 ctgtgaacgg ttggacactg tggctggggg actgcagggc ctgcgcgagg gcctttccag
1201 acacgtggct gggctctggg ctgggctccg ggaaaccaac accaccagcc agatgcaggc
1261 agccctgctg gagaagctgg tcgggggaca ggcgggcctg ggcaggcggc tgggtgccct
1321 taacagctcc ctgcagctcc tggaggaccg tctgcaccag ctcagcctga aggacctcac
1381 tggtgagggg acaaaagggc ctgcaggaga ggctgggccc ccagggcctc ctgggctgca
1441 gggaccccca ggccctgctg gacctccagg atcaccaggc aaggacgggc aagagggccc
1501 catcgggcca ccaggtcctc aaggtgaaca gggagtggag ggggcaccag cagcccctgt
1561 gccccaagtg gcattttcag ctgctctgag tttgccccgg tctgaaccag gcacggtccc
1621 cttcgacaga gtcctgctca atgatggagg ctattatgat ccagagacag gcgtgttcac
1681 agcgccactg gctggacgct acttgctgag cgcggtgctg actgggcacc ggcacgagaa
1741 agtggaggcc gtgctgtccc gctccaacca gggcgtggcc cgcgtagact ccggtggcta
1801 cgagcctgag ggcctggaga ataagccggt ggccgagagc cagcccagcc cgggcaccct
1861 gggcgtcttc agcctcatcc tgccgctgca ggccggggac acggtctgcg tcgacctggt
1921 catggggcag ctggcgcact cggaggagcc gctcaccatc ttcagcgggg ccctgctcta
1981 tggggaccca gagcttgaac acgcgtagac tggggtcccg cccgacgtgt ctacgtcggc
2041 tgaagagaca gcgggggcgg cgggctcctg gggtctcgcc tgagacgggg cacctagccc
2101 tgggcgagcg ccgcacccgg gcccgcagcg gcaccgcgcc cagagcggcc tctccccacg
2161 cccggggcgc gccggctcag ggaggctcgg ggccgcccat gcagactttt ggcctggcgc
2221 gatcccccaa gaacccctcc agggccggcc tgcggaggag ccgatcctcg caccctccgc
2281 tccctccact ggccctccag gtcgattccc tgggctccag gctcccccgc gcgggcgccg
2341 cccaccgcca tactaaacga tcgaggaata aagacacttg gtttttctaa aaaaaaaaaa
2401 aaaaaaaaaa aaaaaaaa
//