LOCUS BC007522 2322 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens lysyl oxidase-like 4, mRNA (cDNA clone IMAGE:3353864),
complete cds.
ACCESSION BC007522
VERSION BC007522.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2322)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2322)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923658
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2322
/db_xref="H-InvDB:HIT000033275"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3353864"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2322
/gene="LOXL4"
/gene_synonym="FLJ21889"
/gene_synonym="LOXC"
/db_xref="GeneID:84171"
/db_xref="MIM:607318"
CDS 341..1138
/gene="LOXL4"
/gene_synonym="FLJ21889"
/gene_synonym="LOXC"
/codon_start=1
/product="LOXL4 protein"
/protein_id="AAH07522.1"
/db_xref="GeneID:84171"
/db_xref="MIM:607318"
/translation="MSGVRCSGTELALQQCQRHGPVHCSHGGGRFLAGVSCMDSAPDL
VMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRRLLRFSTQIYNLGR
TDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKASFCLEDTNCPTG
LQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVNPHYEVAESD
FSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI"
misc_feature 464..1075
/gene="LOXL4"
/gene_synonym="FLJ21889"
/gene_synonym="LOXC"
/note="Lysyl_oxidase; Region: Lysyl oxidase"
/db_xref="CDD:pfam01186"
BASE COUNT 603 a 609 c 621 g 489 t
ORIGIN
1 gcgctgcagg ggatatgagc ggaccctcag cgactgccct gccctggaag ggtcccagaa
61 tggttgccaa catgagaatg ctgctgctgt caggtgcaat gtccctaaca tgggctttca
121 gaatcaggtg cgcttggctg gtgggcgtat ccctgaggag gggctattgg aggtgcaggt
181 ggaggtgaac ggggtcccac gctgggggag cgtgtgcagt gaaaactggg ggctcaccga
241 agccatggtg gcctgccgac agctcggcct gggttttgcc atccatgcct acaaggaaac
301 ctggttctgg tcggggacgc caagggccca ggaggtggtg atgagtgggg tgcgctgctc
361 aggcacagag ctggccctgc agcagtgcca gaggcacggg ccggtgcact gctcccacgg
421 tggcgggcgc ttcctggctg gagtctcctg catggacagt gcaccagacc tggtgatgaa
481 cgcccagcta gtgcaggaga cggcctactt ggaggaccgc ccgctcagcc agctgtattg
541 tgcccacgag gagaactgcc tctccaagtc tgcggatcac atggactggc cctacggata
601 ccgccgccta ttgcgcttct ccacacagat ctacaatctg ggccggactg actttcgtcc
661 aaagactgga cgcgatagct gggtttggca ccagtgccac aggcattacc acagcattga
721 ggtcttcacc cactacgacc tcctcactct caatggctcc aaggtggctg aggggcacaa
781 ggccagcttc tgtctggagg acacaaactg ccccacagga ctgcagcggc gctacgcatg
841 tgccaacttt ggagaacagg gagtgactgt aggctgctgg gacacctacc ggcatgacat
901 tgattgccag tgggtggata tcacagatgt gggccccggg aattatatct tccaggtgat
961 tgtgaacccc cactatgaag tggcagagtc agatttctcc aacaatatgc tgcagtgccg
1021 ctgcaagtat gatgggcacc gggtctggct gcacaactgc cacacaggga attcataccc
1081 agccaatgca gaactctccc tggagcagga acagcgtctc aggaacaacc tcatctgaag
1141 ctgtcactgc acactcctag ctgctgccga tacaccagat acctcagctt attggagcca
1201 tgcccttcac agagtcccaa ctcagaggaa aagggccagt gccaaggggc accaagaacc
1261 tgctcaggaa gccttttgat ggcaagatca ccaatccaga tggtattgct ccctcaggat
1321 ggctctgggc ctgcccctaa gggcctgtgg cctatggaat atgtcctcca ggctttgctc
1381 agctgagctc ctcttctgta aggaaaccca gtcatccctg aatcttgcca cagagatccg
1441 ggattcagga gctctcagtt tcttagggat ggactatggc ccagtccccc atctaagtgg
1501 tgctttgcaa atgtcttgga ggagtatagg acagaggacc aaaatacaca gcaggtagtg
1561 ttagctctct gctaggagct caaagcaaca caacttgtat caaaatcaca actggcagag
1621 aagctggtgg atccaatcct ttcttcatct gttgttattt agaactcacc tctcacactc
1681 tgttctttag tgtccttacc tttatcttac cacacacatg ggtgtttcta ttatccttgg
1741 aagcacagac ctcgggcatc cccttattgc ctgatgggcc aacaccaaca gttacggagt
1801 gcttgagaag gggcaagttt cacagaaatg gccagatagg gccttcctac agagcagcaa
1861 gagtaggcca agcagaaaga ctgctgaggt aacacggacc ccagcccctg tcagggcctc
1921 tgccaaggaa ataatatgga ccatttacct ggcaggcagt ctgctctctc tcaggatcac
1981 cacgcatctc aggattggtc taaacttcaa gtctcaacca agtgtctgaa gtgaactttg
2041 cattgaataa atttttgcca tggaaagaac atcaaacaag ccactcatct ctacagagat
2101 aagaaaacaa gtttggcaga gcaagagaca gaagaccgtg gagaaatcag aagggggaac
2161 agtcagttta gttaaggatg gaacctggga aaggccacca ttcctgcttg atggggctct
2221 gatttgctct tgctcaagtg gaataaaacc ccatggtctt cttgaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa cc
//