LOCUS BC007440 1789 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens 2-hydroxyacyl-CoA lyase 1, mRNA (cDNA clone
IMAGE:2959666), complete cds.
ACCESSION BC007440
VERSION BC007440.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1789)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1789)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007440.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: g Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6912417
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1789
/db_xref="H-InvDB:HIT000050481"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2959666"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1789
/gene="HACL1"
/gene_synonym="2-HPCL"
/gene_synonym="HPCL2"
/gene_synonym="PHYH2"
/db_xref="GeneID:26061"
/db_xref="HGNC:HGNC:17856"
/db_xref="MIM:604300"
CDS 95..454
/gene="HACL1"
/gene_synonym="2-HPCL"
/gene_synonym="HPCL2"
/gene_synonym="PHYH2"
/codon_start=1
/product="HACL1 protein"
/protein_id="AAH07440.1"
/db_xref="GeneID:26061"
/db_xref="HGNC:HGNC:17856"
/db_xref="MIM:604300"
/translation="MPDSNFAERSEEQVSGAKVIAQALKTQDVEYIFGIVGIPVTEIA
IAAQQLGIKYIGMRNEQAACYAASAIGYLTSRPGVCLVVSGPGLIHALGGMANANMNC
WLKLVDYIPSSLPAQAA"
BASE COUNT 516 a 372 c 432 g 469 t
ORIGIN
1 ccagaggtgg cgtgctgccg acttcgcgtt tgccttgctg gatgattccg cttgtttgcc
61 ggctgcgtga gtgcttagag cttttcggtg gaagatgccg gacagtaact tcgcagagcg
121 cagcgaggag caggtgtctg gtgctaaagt catcgctcag gccctgaaaa cgcaagatgt
181 ggagtacata tttggcatcg taggcatccc agtgaccgaa atcgccattg ctgcccagca
241 gctaggcatc aagtacatcg ggatgaggaa tgagcaagcg gcttgttatg ctgcctccgc
301 gattggatat ctgacaagca ggccaggagt ctgccttgtt gtttctggcc caggtctcat
361 ccatgccttg ggcggtatgg caaatgcaaa catgaactgc tggttgaagc ttgtagatta
421 tataccaagt tctctgcccg cccaagcagc atagaagcta ttccttttgt tattgaaaag
481 gcagtgagaa gcagtatcta tggtcgtcca ggtgcttgct atgttgacat accagcagat
541 tttgtgaacc ttcaggtgaa tgtgaattct ataaagtaca tggaacgctg catgtcacct
601 cctattagca tggcagaaac ctctgctgtg tgcacggcgg cttctgttat taggaatgcc
661 aaacaacccc ttcttatcat cgggaaaggt gctgcttacg ctcatgcaga agagagtatc
721 aagaaattgg tggagcaata taaactgcca tttttgccca cccctatggg gaagggtgtt
781 gtccctgaca accatccata ctgtgtaggt gcagccagat ccaggttgat atctgtgcag
841 aagaattggg gaataatgta aagcccgctg ttactttgct aggaaacata catgctgtca
901 ctaagcagct tttagaggaa cttgataaaa caccatggca gtatcctcca gagagcaagt
961 ggtggaaaac tctgagagaa aaaatgaaga gcaatgaagc tgcatccaag gaactagctt
1021 ctaaaaaatc cctacctatg aattattaca cagtattcta ccatgttcaa gaacaactac
1081 ctagagactg tttcgtggta agtgaaggag caaatactat ggacattgga cggactgtgc
1141 ttcagaacta ccttcctcgt cacaggcttg atgctggtac tttcggaaca atgggagttg
1201 gtttgggatt tgctattgca gctgccgtgg tggctaaaga tagaagccct gggcaatgga
1261 tcatctgtgt ggaaggagac agtgcatttg ggttttctgg catggaggta gaaaccatct
1321 gcaggtacaa cttgccaatc atactgttgg tagtgaataa caatggaatt taccaaggtt
1381 ttgatacaga tacttggaaa gaaatgttaa aatttcaaga tgctactgca gtggtccctc
1441 caatgtgttt gctgccaaat tcacattatg agcaagtcat gactgcattt ggaggcaaag
1501 ggtattttgt acaaacacca gaagaactcc aaaaatccct gaggcagagc ctagcagaca
1561 caactaaacc ttctcttatc aacatcatga ttgagccaca agccacacgg aaggcccagg
1621 attttcattg gctgacccgc tctaatatgt aaataaagac gccagttggt ggtcttgagt
1681 tttctctttc ttgcaagatg aaattttatt ttccacagca aaattactct actgttaaaa
1741 ttgtgcaaaa taaaataaac atttaaaatg aaaaaaaaaa aaaaaaaaa
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