LOCUS BC007388 1736 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens POU class 2 homeobox 1, mRNA (cDNA clone
IMAGE:3830953), partial cds.
ACCESSION BC007388
VERSION BC007388.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1736)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1736)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007388.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: d Column: 4.
FEATURES Location/Qualifiers
source 1..1736
/db_xref="H-InvDB:HIT000086815"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3830953"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1736
/gene="POU2F1"
/gene_synonym="OCT1"
/db_xref="GeneID:5451"
/db_xref="HGNC:HGNC:9212"
/db_xref="MIM:164175"
CDS <1..1686
/gene="POU2F1"
/gene_synonym="OCT1"
/codon_start=1
/product="POU2F1 protein"
/protein_id="AAH07388.1"
/db_xref="GeneID:5451"
/db_xref="HGNC:HGNC:9212"
/db_xref="MIM:164175"
/translation="VQAAIPQTQLMLAGGQITGLTLTPAQQQLLLQQAQAQAQLLAAA
VQQHSASQQHSAAGATISASAATPMTQIPLSQPIQIAQDLQQLQQLQQQNLNLQQFVL
VHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQSQPSITLTSQPATP
TRTIAATPIQTLPQSQSTPKRIDTPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVG
LAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSAL
NSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVW
FCNRRQKEKRINPPSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSAATTLTVSPVLPL
TSAAVTNLSVTGTSDTTSNNTATVISTAPPASSAVTSPSLSPSPSASASTSEASSASE
TSTTQTTSTPLSSPLGTSQVMVTASGLQTAAAAALQGAAQLPANASLAAMAAAAGLNP
SLMAPSQFAAGGALLSLNPGTLSGALSPALMSNSTLATIQGLLHGLENFLTKN"
BASE COUNT 498 a 532 c 365 g 341 t
ORIGIN
1 gtgcaggcag ccattcccca gacccagctt atgctagctg gaggacagat aactgggctt
61 actttgacgc ctgcccagca acagttacta ctccagcagg cacaggcaca ggcacagctg
121 ctggctgctg cagtgcagca gcactccgcc agccagcagc acagtgctgc tggagccacc
181 atctccgcct ctgctgccac gcccatgacg cagatccccc tgtctcagcc catacagatc
241 gcacaggatc ttcaacaact gcaacagctt caacagcaga atctcaacct gcaacagttt
301 gtgttggtgc atccaaccac caatttgcag ccagcgcagt ttatcatctc acagacgccc
361 cagggccagc agggtctcct gcaagcgcaa aatcttctaa cgcaactacc tcagcaaagc
421 caagccaacc tcctacagtc gcagccaagc atcaccctca cctcccagcc agcaacccca
481 acacgcacaa tagcagcaac cccaattcag acacttccac agagccagtc aacaccaaag
541 cgaattgata ctcccagctt ggaggagccc agtgaccttg aggagcttga gcagtttgcc
601 aagaccttca aacaaagacg aatcaaactt ggattcactc agggtgatgt tgggctcgct
661 atggggaaac tatatggaaa tgacttcagc caaactacca tctctcgatt tgaagccttg
721 aacctcagct ttaagaacat gtgcaagttg aagccacttt tagagaagtg gctaaatgat
781 gcagagaacc tctcatctga ttcgtccctc tccagcccaa gtgccctgaa ttctccagga
841 attgagggct tgagccgtag gaggaagaaa cgcaccagca tagagaccaa catccgtgtg
901 gccttagaga agagtttctt ggagaatcaa aagcctacct cggaagagat cactatgatt
961 gctgatcagc tcaatatgga aaaagaggtg attcgtgttt ggttctgtaa ccgccgccag
1021 aaagaaaaaa gaatcaaccc accaagcagt ggtgggacca gcagctcacc tattaaagca
1081 attttcccca gcccaacttc actggtggcg accacaccaa gccttgtgac tagcagtgca
1141 gcaactaccc tcacagtcag ccctgtcctc cctctgacca gtgctgctgt gacgaatctt
1201 tcagttacag gcacttcaga caccacctcc aacaacacag caaccgtgat ttccacagcg
1261 cctccagctt cctcagcagt cacgtccccc tctctgagtc cctccccttc tgcctcagcc
1321 tccacctccg aggcatccag tgccagtgag accagcacaa cacagaccac ctccactcct
1381 ttgtcctccc ctcttgggac cagccaggtg atggtgacag catcaggttt gcaaacagca
1441 gcagctgctg cccttcaagg agctgcacag ttgccagcaa atgccagtct tgctgccatg
1501 gcagctgctg caggactaaa cccaagcctg atggcaccct cacagtttgc ggctggaggt
1561 gccttactca gtctgaatcc agggaccctg agcggtgctc tcagcccagc tttaatgagc
1621 aacagtacac tggcaactat tcaaggattg cttcatggat tggagaactt tctaaccaaa
1681 aattaaaaaa aaaaaaaaaa aagaaacaaa aaaatcaaaa aaaaaaaaaa aaaaaa
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